Variant report

Variant	rs7017730
Chromosome Location	chr8:95636423-95636424
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2554404	1.00[AMR][1000 genomes]
rs55824750	1.00[AMR][1000 genomes]
rs58384068	1.00[AMR][1000 genomes]
rs7006584	1.00[AMR][1000 genomes]
rs7010617	1.00[AMR][1000 genomes]
rs73695602	1.00[AMR][1000 genomes]
rs73697003	1.00[AMR][1000 genomes]
rs73697005	1.00[AMR][1000 genomes]
rs73697016	1.00[AMR][1000 genomes]
rs73697017	1.00[AMR][1000 genomes]
rs73697019	1.00[AMR][1000 genomes]
rs73697021	1.00[AMR][1000 genomes]
rs73697022	1.00[AMR][1000 genomes]
rs7824072	1.00[AMR][1000 genomes]
rs7837744	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv429928	chr8:95488800-95672033	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv429929	chr8:95564533-95676894	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv516679	chr8:95616980-95638496	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95634400-95636800	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr8:95635600-95636600	Enhancers	Stomach Mucosa	stomach
3	chr8:95635600-95636600	Enhancers	NHEK	skin
4	chr8:95635800-95636600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:95635800-95636600	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr8:95636000-95636600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:95636000-95636600	Enhancers	Duodenum Mucosa	Duodenum
8	chr8:95636000-95637400	Weak transcription	Gastric	stomach
9	chr8:95636000-95650800	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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