Variant report

Variant	rs7007250
Chromosome Location	chr8:117801441-117801442
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:117778457..117780615-chr8:117800486..117802167,2	K562	blood:
2	chr8:117800465..117801656-chr8:117899442..117900372,5	K562	blood:
3	chr8:117798017..117801805-chr8:117813902..117817416,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147677	Chromatin interaction
ENSG00000147679	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10085939	0.82[EUR][1000 genomes]
rs10086419	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10088177	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10093551	0.83[EUR][1000 genomes]
rs10096134	0.81[AMR][1000 genomes]
rs10112279	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10112604	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10505282	0.82[EUR][1000 genomes]
rs10505287	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11781970	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1317271	0.82[EUR][1000 genomes]
rs13258529	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13262725	0.81[AMR][1000 genomes]
rs13277714	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13277958	0.81[AMR][1000 genomes]
rs13279543	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1347626	0.81[AMR][1000 genomes]
rs1436765	0.81[AMR][1000 genomes]
rs1436766	0.81[AMR][1000 genomes]
rs17811708	0.83[EUR][1000 genomes]
rs3088140	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34519652	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35338453	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35905748	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4256624	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4278180	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4289846	0.81[AMR][1000 genomes]
rs4289847	0.82[EUR][1000 genomes]
rs4335152	0.81[AMR][1000 genomes]
rs4335153	0.81[AMR][1000 genomes]
rs4422805	0.81[AMR][1000 genomes]
rs4472547	0.82[EUR][1000 genomes]
rs4601347	0.82[EUR][1000 genomes]
rs4623456	0.82[EUR][1000 genomes]
rs4629900	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55951040	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6983032	0.81[EUR][1000 genomes]
rs6988841	0.88[EUR][1000 genomes]
rs7001938	0.83[EUR][1000 genomes]
rs7013617	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7464414	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7830860	0.81[AMR][1000 genomes]
rs7833054	0.82[EUR][1000 genomes]
rs7836549	0.83[EUR][1000 genomes]
rs7843852	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831434	chr8:117784467-117977825	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1027259	chr8:117790928-117842055	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1034015	chr8:117790928-117843979	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117780400-117830200	Weak transcription	Aorta	Aorta
2	chr8:117780600-117802200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:117782000-117814000	Weak transcription	Ovary	ovary
4	chr8:117784600-117804800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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