Variant report

Variant	rs7843852
Chromosome Location	chr8:117676506-117676507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:117676254..117678183-chr8:117682337..117686506,3	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10085939	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10086419	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10088177	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10093551	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10096134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105610	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112279	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10112604	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10505282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505286	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10505287	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10808484	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11781970	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12547058	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1317271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13258529	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13262725	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277714	0.82[EUR][1000 genomes]
rs13277958	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347626	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436765	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1436766	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1529945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17811708	1.00[LWK][hapmap]
rs2118108	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3088140	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes]
rs34519652	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35338453	0.82[EUR][1000 genomes]
rs35905748	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4256624	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4278180	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4289846	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4289847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4335152	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4335153	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4422805	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4472547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4601347	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4623456	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4629900	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4645587	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs55951040	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6469656	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6469657	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983032	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6988841	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7007250	0.82[EUR][1000 genomes]
rs7013617	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7464414	0.82[EUR][1000 genomes]
rs7820778	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821132	0.90[AFR][1000 genomes]
rs7830860	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7833054	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7836549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7837313	1.00[YRI][hapmap]
rs7846316	1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117647200-117677800	Weak transcription	Gastric	stomach
2	chr8:117654600-117715200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:117659000-117677200	Weak transcription	Thymus	Thymus
4	chr8:117659000-117698000	Weak transcription	Hela-S3	cervix
5	chr8:117660000-117697400	Weak transcription	NHEK	skin
6	chr8:117664600-117682000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:117665200-117677600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr8:117665800-117677400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr8:117665800-117697400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:117666000-117699000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr8:117667000-117699200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr8:117668200-117688400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:117668200-117707000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr8:117668400-117677800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr8:117670200-117707000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr8:117670400-117689600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr8:117670600-117678000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr8:117670600-117696800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr8:117670800-117682000	Weak transcription	K562	blood
20	chr8:117671000-117677600	Weak transcription	Fetal Brain Female	brain
21	chr8:117671000-117678400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr8:117671000-117681600	Weak transcription	Left Ventricle	heart
23	chr8:117671000-117682400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr8:117671000-117683800	Weak transcription	Ovary	ovary
25	chr8:117671000-117693200	Weak transcription	Dnd41	blood
26	chr8:117671000-117696800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr8:117671000-117717600	Weak transcription	HepG2	liver
28	chr8:117671200-117677800	Weak transcription	Brain Germinal Matrix	brain
29	chr8:117671200-117681000	Weak transcription	Adipose Nuclei	Adipose
30	chr8:117671200-117682400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr8:117671200-117687000	Weak transcription	Fetal Muscle Leg	muscle
32	chr8:117671200-117687400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr8:117671200-117688600	Weak transcription	Placenta	Placenta
34	chr8:117671200-117690000	Weak transcription	Fetal Intestine Large	intestine
35	chr8:117671400-117677200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr8:117671400-117683400	Weak transcription	Fetal Lung	lung
37	chr8:117671400-117685800	Weak transcription	HSMM	muscle
38	chr8:117673000-117677600	Weak transcription	GM12878-XiMat	blood
39	chr8:117673000-117681600	Weak transcription	HUVEC	blood vessel
40	chr8:117673000-117697400	Weak transcription	NH-A	brain
41	chr8:117673600-117688800	Weak transcription	Primary B cells from cord blood	blood
42	chr8:117674400-117677800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr8:117674800-117676600	Enhancers	Colon Smooth Muscle	Colon
44	chr8:117674800-117679000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr8:117674800-117706800	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr8:117675200-117677800	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr8:117675400-117677400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr8:117675400-117677600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr8:117675400-117678000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr8:117675400-117682200	Weak transcription	Aorta	Aorta

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