Variant report

Variant	rs7820778
Chromosome Location	chr8:117666463-117666464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:117663796..117666790-chr8:117671372..117673169,2	MCF-7	breast:
2	chr8:117666114..117668012-chr8:117668577..117670087,2	MCF-7	breast:
3	chr19:54975628..54977195-chr8:117663781..117666723,2	MCF-7	breast:
4	chr8:117662547..117665506-chr8:117665658..117667921,2	K562	blood:

Variant related genes	Relation type
ENSG00000147677	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10085939	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10086419	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10088177	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10093551	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10096134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105610	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112279	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10112604	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10283129	0.88[YRI][hapmap]
rs10505282	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505286	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10505287	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10808484	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11781970	0.89[ASN][1000 genomes]
rs12547058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1317271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13258529	1.00[CEU][hapmap]
rs13262725	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277958	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436765	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1436766	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1529945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118108	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3088140	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs35905748	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4256624	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4278180	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4289846	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4289847	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4335152	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4335153	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4422805	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4472547	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4601347	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4623456	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4629900	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4645587	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4876679	0.93[YRI][hapmap]
rs55951040	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6469656	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6469657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980504	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983032	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6988841	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6996020	0.85[YRI][hapmap]
rs7013617	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7821132	0.80[EUR][1000 genomes]
rs7830860	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7831811	0.86[YRI][hapmap]
rs7833054	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7833618	0.81[YRI][hapmap]
rs7836549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7843852	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117636400-117670800	Weak transcription	Pancreas	Pancrea
2	chr8:117647200-117677800	Weak transcription	Gastric	stomach
3	chr8:117648000-117667400	Weak transcription	Fetal Heart	heart
4	chr8:117649000-117670000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr8:117649000-117670400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr8:117650400-117666600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:117651200-117675000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:117651400-117670400	Weak transcription	Psoas Muscle	Psoas
9	chr8:117652400-117669200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr8:117652800-117670400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:117654000-117672600	Weak transcription	Esophagus	oesophagus
12	chr8:117654600-117675200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:117654600-117715200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:117655000-117668200	Strong transcription	Dnd41	blood
15	chr8:117655000-117670400	Weak transcription	Stomach Mucosa	stomach
16	chr8:117655400-117670400	Weak transcription	Right Ventricle	heart
17	chr8:117656000-117667800	Weak transcription	Colonic Mucosa	Colon
18	chr8:117656800-117667800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr8:117656800-117670000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr8:117657200-117670200	Weak transcription	Fetal Intestine Small	intestine
21	chr8:117657800-117672200	Weak transcription	Lung	lung
22	chr8:117658200-117667600	Weak transcription	Brain Germinal Matrix	brain
23	chr8:117658800-117666600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr8:117658800-117669200	Weak transcription	Small Intestine	intestine
25	chr8:117658800-117669600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr8:117658800-117674800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr8:117659000-117666600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr8:117659000-117666800	Weak transcription	Left Ventricle	heart
29	chr8:117659000-117669000	Weak transcription	Aorta	Aorta
30	chr8:117659000-117669400	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr8:117659000-117669400	Weak transcription	Fetal Stomach	stomach
32	chr8:117659000-117669600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr8:117659000-117670200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr8:117659000-117670400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr8:117659000-117670400	Weak transcription	Fetal Intestine Large	intestine
36	chr8:117659000-117670400	Weak transcription	Fetal Muscle Leg	muscle
37	chr8:117659000-117670400	Weak transcription	Ovary	ovary
38	chr8:117659000-117670400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr8:117659000-117670600	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr8:117659000-117677200	Weak transcription	Thymus	Thymus
41	chr8:117659000-117698000	Weak transcription	Hela-S3	cervix
42	chr8:117659200-117669000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr8:117659200-117669600	Weak transcription	A549	lung
44	chr8:117659200-117670600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr8:117659200-117671000	Weak transcription	Placenta	Placenta
46	chr8:117659400-117669200	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr8:117660000-117667000	Weak transcription	HMEC	breast
48	chr8:117660000-117697400	Weak transcription	NHEK	skin
49	chr8:117660800-117669400	Weak transcription	Colon Smooth Muscle	Colon
50	chr8:117660800-117675200	Weak transcription	Liver	Liver

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