Variant report

Variant	rs7009418
Chromosome Location	chr8:59233748-59233749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10099695	0.80[ASN][1000 genomes]
rs12550314	0.82[ASN][1000 genomes]
rs2925657	0.81[AFR][1000 genomes]
rs2925660	0.82[ASN][1000 genomes]
rs2925666	0.80[ASN][1000 genomes]
rs2970741	0.85[AFR][1000 genomes]
rs2970754	0.83[ASN][1000 genomes]
rs2970756	0.80[ASN][1000 genomes]
rs2970758	0.82[ASN][1000 genomes]
rs2970765	0.82[ASN][1000 genomes]
rs2970766	0.82[ASN][1000 genomes]
rs4562301	0.81[AFR][1000 genomes]
rs4563874	0.81[AFR][1000 genomes]
rs733665	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761427	chr8:59204373-59242564	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59229400-59241600	Weak transcription	Right Atrium	heart
2	chr8:59229800-59236400	Weak transcription	Spleen	Spleen
3	chr8:59231000-59236400	Weak transcription	Left Ventricle	heart
4	chr8:59232400-59234800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:59232600-59235000	Enhancers	Primary B cells from peripheral blood	blood
6	chr8:59232600-59235400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr8:59232800-59234600	Enhancers	Primary T cells fromperipheralblood	blood
8	chr8:59233000-59234200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr8:59233200-59234400	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr8:59233400-59234400	Enhancers	Primary T cells from cord blood	blood
11	chr8:59233600-59233800	Enhancers	Primary B cells from cord blood	blood
12	chr8:59233600-59234400	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr8:59233600-59235200	Flanking Active TSS	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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