Variant report

Variant	rs4562301
Chromosome Location	chr8:59215303-59215304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10098029	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10099695	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10108483	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10435569	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10808692	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12550314	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1551544	0.86[EUR][1000 genomes]
rs2925657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2925660	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2925662	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2925666	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2925671	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2970740	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2970741	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2970754	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2970755	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2970756	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2970758	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2970765	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2970766	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36073271	0.86[ASN][1000 genomes]
rs4072993	0.96[ASN][1000 genomes]
rs4237027	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4237028	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4259404	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4298479	0.96[ASN][1000 genomes]
rs4336601	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4342578	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4373506	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4385457	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4406384	0.96[ASN][1000 genomes]
rs4478561	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4526346	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4538862	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4563874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4737492	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4738657	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4738658	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4738661	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4738662	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4738664	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60231854	0.92[ASN][1000 genomes]
rs60422963	0.92[ASN][1000 genomes]
rs6471697	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6471699	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6471701	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6982876	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6993120	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7002531	0.96[ASN][1000 genomes]
rs7008300	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7008385	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7008471	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7009418	0.81[AFR][1000 genomes]
rs7010972	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs733665	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7815702	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7829799	0.96[ASN][1000 genomes]
rs7830292	0.96[ASN][1000 genomes]
rs7845693	0.96[ASN][1000 genomes]
rs9297988	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761427	chr8:59204373-59242564	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59212600-59219400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:59213200-59219400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:59215200-59215400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:59215200-59215400	Enhancers	HUES64 Cell Line	embryonic stem cell

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