Variant report
| Variant | rs60231854 |
|---|---|
| Chromosome Location | chr8:59160537-59160538 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:59143409..59146068-chr8:59158188..59161044,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:56)
| rs_ID | r2[population] |
|---|---|
| rs10098029 | 0.96[ASN][1000 genomes] |
| rs10099695 | 0.83[ASN][1000 genomes] |
| rs10108483 | 0.94[ASN][1000 genomes] |
| rs10435569 | 0.94[ASN][1000 genomes] |
| rs10808692 | 0.94[ASN][1000 genomes] |
| rs12550314 | 0.85[ASN][1000 genomes] |
| rs2925657 | 0.94[ASN][1000 genomes] |
| rs2925660 | 0.85[ASN][1000 genomes] |
| rs2925666 | 0.83[ASN][1000 genomes] |
| rs2925671 | 0.94[ASN][1000 genomes] |
| rs2970740 | 0.94[ASN][1000 genomes] |
| rs2970741 | 0.94[ASN][1000 genomes] |
| rs2970754 | 0.87[ASN][1000 genomes] |
| rs2970756 | 0.83[ASN][1000 genomes] |
| rs2970758 | 0.85[ASN][1000 genomes] |
| rs2970765 | 0.85[ASN][1000 genomes] |
| rs2970766 | 0.85[ASN][1000 genomes] |
| rs36073271 | 0.86[ASN][1000 genomes] |
| rs4072993 | 0.96[ASN][1000 genomes] |
| rs4237027 | 0.94[ASN][1000 genomes] |
| rs4237028 | 0.94[ASN][1000 genomes] |
| rs4259404 | 0.94[ASN][1000 genomes] |
| rs4298479 | 0.96[ASN][1000 genomes] |
| rs4336601 | 0.94[ASN][1000 genomes] |
| rs4342578 | 0.96[ASN][1000 genomes] |
| rs4373506 | 0.94[ASN][1000 genomes] |
| rs4385457 | 0.96[ASN][1000 genomes] |
| rs4406384 | 0.96[ASN][1000 genomes] |
| rs4478561 | 0.96[ASN][1000 genomes] |
| rs4526346 | 0.94[ASN][1000 genomes] |
| rs4538862 | 0.96[ASN][1000 genomes] |
| rs4562301 | 0.92[ASN][1000 genomes] |
| rs4563874 | 0.94[ASN][1000 genomes] |
| rs4737492 | 0.94[ASN][1000 genomes] |
| rs4738657 | 0.94[ASN][1000 genomes] |
| rs4738658 | 0.94[ASN][1000 genomes] |
| rs4738661 | 0.94[ASN][1000 genomes] |
| rs4738662 | 0.94[ASN][1000 genomes] |
| rs4738664 | 0.94[ASN][1000 genomes] |
| rs60422963 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6471697 | 0.94[ASN][1000 genomes] |
| rs6471699 | 0.94[ASN][1000 genomes] |
| rs6471701 | 0.94[ASN][1000 genomes] |
| rs6982876 | 0.94[ASN][1000 genomes] |
| rs6993120 | 0.94[ASN][1000 genomes] |
| rs7002531 | 0.96[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7008300 | 0.96[ASN][1000 genomes] |
| rs7008385 | 0.94[ASN][1000 genomes] |
| rs7008471 | 0.94[ASN][1000 genomes] |
| rs7010972 | 0.94[ASN][1000 genomes] |
| rs733665 | 0.83[ASN][1000 genomes] |
| rs7815702 | 0.94[ASN][1000 genomes] |
| rs7829799 | 0.96[ASN][1000 genomes] |
| rs7830292 | 0.96[ASN][1000 genomes] |
| rs7845693 | 0.96[ASN][1000 genomes] |
| rs9297988 | 0.96[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:59147400-59161000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
