Variant report

Variant	rs7830292
Chromosome Location	chr8:59172437-59172438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CYP7A1-1	chr8:59171164-59172583	XLOC_007090
2	lnc-CYP7A1-1	chr8:59172307-59172583	XLOC_007090
3	lnc-CYP7A1-1	chr8:59172307-59172583	ENSG00000253281
4	lnc-CYP7A1-1	chr8:59172418-59172583	ENSG00000253281
5	lnc-CYP7A1-1	chr8:59172290-59172583	ENSG00000253281
6	lnc-CYP7A1-1	chr8:59172303-59172583	NONHSAT126778
7	lnc-CYP7A1-1	chr8:59172307-59172583	NONHSAT126780
8	lnc-CYP7A1-1	chr8:59172417-59172583	ENSG00000253281.2

No data

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10098029	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10099695	0.87[ASN][1000 genomes]
rs10108483	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10435569	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10808692	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12550314	0.89[ASN][1000 genomes]
rs2925657	0.98[ASN][1000 genomes]
rs2925660	0.89[ASN][1000 genomes]
rs2925666	0.87[ASN][1000 genomes]
rs2925671	0.98[ASN][1000 genomes]
rs2970740	0.98[ASN][1000 genomes]
rs2970741	0.98[ASN][1000 genomes]
rs2970754	0.90[ASN][1000 genomes]
rs2970755	0.83[ASN][1000 genomes]
rs2970756	0.87[ASN][1000 genomes]
rs2970758	0.89[ASN][1000 genomes]
rs2970765	0.89[ASN][1000 genomes]
rs2970766	0.89[ASN][1000 genomes]
rs36073271	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4072993	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237027	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4237028	0.98[ASN][1000 genomes]
rs4259404	0.98[ASN][1000 genomes]
rs4298479	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4336601	0.98[ASN][1000 genomes]
rs4342578	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4373506	0.98[ASN][1000 genomes]
rs4385457	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4406384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4478561	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4526346	0.98[ASN][1000 genomes]
rs4538862	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4562301	0.96[ASN][1000 genomes]
rs4563874	0.98[ASN][1000 genomes]
rs4737492	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4738657	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4738658	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4738661	0.98[ASN][1000 genomes]
rs4738662	0.98[ASN][1000 genomes]
rs4738664	0.98[ASN][1000 genomes]
rs60231854	0.96[ASN][1000 genomes]
rs60422963	0.96[ASN][1000 genomes]
rs6471697	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6471699	0.98[ASN][1000 genomes]
rs6471701	0.98[ASN][1000 genomes]
rs6982876	0.98[ASN][1000 genomes]
rs6993120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7002531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008300	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008385	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7008471	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7010972	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs733665	0.87[ASN][1000 genomes]
rs7815702	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7821169	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7829799	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7845693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7830292	C8orf72	cis	multi-tissue	Pritchard

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59170600-59173000	Weak transcription	GM12878-XiMat	blood
2	chr8:59170800-59187800	Weak transcription	Fetal Lung	lung
3	chr8:59172200-59172600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:59172400-59173400	Enhancers	Fetal Muscle Leg	muscle
5	chr8:59172400-59173800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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