Variant report

Variant	rs4336601
Chromosome Location	chr8:59212989-59212990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59208050..59210067-chr8:59212909..59214826,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10098029	0.98[ASN][1000 genomes]
rs10099695	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10108483	1.00[ASN][1000 genomes]
rs10435569	1.00[ASN][1000 genomes]
rs10808692	1.00[ASN][1000 genomes]
rs12550314	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1551544	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2925657	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2925660	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2925662	0.89[EUR][1000 genomes]
rs2925666	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2925671	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970740	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970741	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970754	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2970755	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2970756	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2970758	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2970765	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2970766	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36073271	0.88[ASN][1000 genomes]
rs4072993	0.98[ASN][1000 genomes]
rs4237027	1.00[ASN][1000 genomes]
rs4237028	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4259404	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4298479	0.98[ASN][1000 genomes]
rs4342578	0.98[ASN][1000 genomes]
rs4373506	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4385457	0.98[ASN][1000 genomes]
rs4406384	0.98[ASN][1000 genomes]
rs4478561	0.98[ASN][1000 genomes]
rs4526346	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4538862	0.98[ASN][1000 genomes]
rs4562301	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4563874	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737492	1.00[ASN][1000 genomes]
rs4738657	1.00[ASN][1000 genomes]
rs4738658	1.00[ASN][1000 genomes]
rs4738661	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738662	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738664	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60231854	0.94[ASN][1000 genomes]
rs60422963	0.94[ASN][1000 genomes]
rs6471697	1.00[ASN][1000 genomes]
rs6471699	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471701	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982876	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6993120	0.96[ASN][1000 genomes]
rs7002531	0.98[ASN][1000 genomes]
rs7008300	0.98[ASN][1000 genomes]
rs7008385	1.00[ASN][1000 genomes]
rs7008471	1.00[ASN][1000 genomes]
rs7010972	1.00[ASN][1000 genomes]
rs733665	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7815702	1.00[ASN][1000 genomes]
rs7829799	0.98[ASN][1000 genomes]
rs7830292	0.98[ASN][1000 genomes]
rs7845693	0.98[ASN][1000 genomes]
rs9297988	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761427	chr8:59204373-59242564	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59210800-59213000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr8:59211600-59213200	Enhancers	Left Ventricle	heart
3	chr8:59212200-59213200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:59212200-59213600	Enhancers	Placenta	Placenta
5	chr8:59212400-59213200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:59212400-59213600	Enhancers	Fetal Heart	heart
7	chr8:59212400-59213800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:59212600-59213200	Enhancers	Placenta Amnion	Placenta Amnion
9	chr8:59212600-59213600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr8:59212600-59213600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr8:59212600-59213600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr8:59212600-59213800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr8:59212600-59219400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:59212800-59213200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr8:59212800-59213200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:59212800-59213200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr8:59212800-59213200	Enhancers	Right Atrium	heart
18	chr8:59212800-59213400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr8:59212800-59213600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr8:59212800-59213600	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr8:59212800-59213600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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