Variant report

Variant	rs1551544
Chromosome Location	chr8:59289347-59289348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59253417..59255179-chr8:59288544..59290443,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10099695	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10100741	0.85[CEU][hapmap]
rs10108483	0.81[ASN][1000 genomes]
rs10110824	0.85[CEU][hapmap]
rs10435569	0.81[ASN][1000 genomes]
rs10808692	0.81[ASN][1000 genomes]
rs12550314	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13255706	0.85[CEU][hapmap]
rs13271316	0.85[CEU][hapmap]
rs13274906	0.85[CEU][hapmap]
rs2925657	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2925660	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2925662	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2925666	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2925671	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2970740	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2970741	0.81[ASN][1000 genomes]
rs2970754	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2970755	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2970756	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2970758	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2970765	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2970766	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4237027	0.81[ASN][1000 genomes]
rs4237028	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4259404	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4298479	0.88[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs4336601	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4373506	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4526346	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4562301	0.86[EUR][1000 genomes]
rs4563874	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4737492	0.81[ASN][1000 genomes]
rs4738657	0.81[ASN][1000 genomes]
rs4738658	0.81[ASN][1000 genomes]
rs4738661	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4738662	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4738664	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6471697	0.81[ASN][1000 genomes]
rs6471699	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6471701	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6982876	0.81[ASN][1000 genomes]
rs6993120	1.00[JPT][hapmap]
rs7002531	1.00[JPT][hapmap]
rs7008385	0.81[ASN][1000 genomes]
rs7008471	0.81[ASN][1000 genomes]
rs7010972	0.81[ASN][1000 genomes]
rs733665	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7815702	0.81[ASN][1000 genomes]
rs9297988	1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1551544	C8orf72	cis	multi-tissue	Pritchard

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59288800-59291400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr8:59289000-59291400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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