Variant report

Variant	rs10110824
Chromosome Location	chr8:59335769-59335770
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59323970..59326918-chr8:59333459..59336402,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10095270	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10100741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10105913	0.88[ASN][1000 genomes]
rs10108817	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10111761	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11552203	0.88[ASN][1000 genomes]
rs13251671	0.82[ASN][1000 genomes]
rs13252159	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13255706	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13260971	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13271316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13271916	0.88[ASN][1000 genomes]
rs13274906	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13277110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469338	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17202769	0.82[ASN][1000 genomes]
rs17202790	0.82[ASN][1000 genomes]
rs17261333	0.94[ASN][1000 genomes]
rs17261550	1.00[CHB][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35476562	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4599797	0.93[CEU][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes]
rs66487220	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66804785	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67257878	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757275	chr8:59305290-59342331	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
2	esv2759619	chr8:59305290-59342331	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv971656	chr8:59331826-59339206	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59324400-59337200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:59324400-59341800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:59324600-59337400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:59324600-59339200	Weak transcription	Esophagus	oesophagus
5	chr8:59324800-59337400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:59324800-59337400	Weak transcription	Fetal Stomach	stomach
7	chr8:59324800-59352000	Weak transcription	HSMMtube	muscle
8	chr8:59324800-59362000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:59325000-59336400	Weak transcription	Osteobl	bone
10	chr8:59325000-59348800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:59325000-59352600	Weak transcription	Fetal Kidney	kidney
12	chr8:59325000-59357600	Weak transcription	NHLF	lung
13	chr8:59325000-59360000	Weak transcription	Right Ventricle	heart
14	chr8:59325000-59361200	Weak transcription	Psoas Muscle	Psoas
15	chr8:59325200-59335800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr8:59325200-59338200	Weak transcription	Ovary	ovary
17	chr8:59325200-59338200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr8:59325200-59339200	Weak transcription	Colon Smooth Muscle	Colon
19	chr8:59325200-59351200	Weak transcription	K562	blood
20	chr8:59325200-59370800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr8:59325400-59337200	Weak transcription	Aorta	Aorta
22	chr8:59325400-59337400	Weak transcription	Brain Anterior Caudate	brain
23	chr8:59325400-59337600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr8:59325400-59349000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:59325400-59351400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr8:59325600-59337400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr8:59325600-59341400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr8:59325600-59348600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr8:59325600-59348800	Weak transcription	Brain Angular Gyrus	brain
30	chr8:59325800-59342200	Weak transcription	Fetal Heart	heart
31	chr8:59325800-59343400	Weak transcription	Brain Hippocampus Middle	brain
32	chr8:59325800-59345200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr8:59325800-59347600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr8:59325800-59353200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr8:59325800-59363200	Weak transcription	Hela-S3	cervix
36	chr8:59326400-59339200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr8:59326600-59348800	Weak transcription	Small Intestine	intestine
38	chr8:59326600-59353400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr8:59326600-59361400	Weak transcription	Fetal Brain Male	brain
40	chr8:59326600-59366200	Weak transcription	Gastric	stomach
41	chr8:59327000-59337400	Weak transcription	Fetal Brain Female	brain
42	chr8:59327000-59352600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr8:59329600-59339200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr8:59330600-59337400	Weak transcription	Adipose Nuclei	Adipose
45	chr8:59330600-59337800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr8:59332200-59349000	Weak transcription	HSMM	muscle
47	chr8:59332400-59347400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr8:59332600-59337400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr8:59332600-59337400	Weak transcription	Primary B cells from cord blood	blood
50	chr8:59332600-59337400	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links