Variant report

Variant	rs13260971
Chromosome Location	chr8:59322442-59322443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10100741	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108817	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10110824	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13252159	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13255706	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13271316	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13274906	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277110	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17261333	0.81[ASN][1000 genomes]
rs17261550	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35476562	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66487220	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66804785	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757275	chr8:59305290-59342331	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
2	esv2759619	chr8:59305290-59342331	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59318200-59323400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:59319200-59323000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr8:59322400-59322600	Enhancers	Rectal Smooth Muscle	rectum
4	chr8:59322400-59322600	Enhancers	Spleen	Spleen
5	chr8:59322400-59323200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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