Variant report

Variant	rs17261550
Chromosome Location	chr8:59342785-59342786
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:59342660-59342810	NHLF	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59330587..59332964-chr8:59341422..59343603,3	K562	blood:
2	chr8:59330587..59332964-chr8:59341646..59343603,2	K562	blood:

Variant related genes	Relation type
ENSG00000250031	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10095270	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10100741	1.00[CHB][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10105913	0.88[ASN][1000 genomes]
rs10108817	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110824	1.00[CHB][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10111761	1.00[CHB][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11552203	0.88[ASN][1000 genomes]
rs13251671	0.82[ASN][1000 genomes]
rs13252159	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13255706	1.00[CHB][hapmap];0.86[YRI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13260971	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13271316	1.00[CHB][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13271916	0.88[ASN][1000 genomes]
rs13274906	1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13277110	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469338	1.00[CHB][hapmap];0.92[YRI][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17202769	0.82[ASN][1000 genomes]
rs17202790	0.82[ASN][1000 genomes]
rs17261333	0.94[ASN][1000 genomes]
rs35476562	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4599797	0.89[YRI][hapmap];0.83[AMR][1000 genomes]
rs66487220	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66804785	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67257878	0.88[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59324800-59352000	Weak transcription	HSMMtube	muscle
2	chr8:59324800-59362000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:59325000-59348800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:59325000-59352600	Weak transcription	Fetal Kidney	kidney
5	chr8:59325000-59357600	Weak transcription	NHLF	lung
6	chr8:59325000-59360000	Weak transcription	Right Ventricle	heart
7	chr8:59325000-59361200	Weak transcription	Psoas Muscle	Psoas
8	chr8:59325200-59351200	Weak transcription	K562	blood
9	chr8:59325200-59370800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr8:59325400-59349000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:59325400-59351400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr8:59325600-59348600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr8:59325600-59348800	Weak transcription	Brain Angular Gyrus	brain
14	chr8:59325800-59343400	Weak transcription	Brain Hippocampus Middle	brain
15	chr8:59325800-59345200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr8:59325800-59347600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr8:59325800-59353200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr8:59325800-59363200	Weak transcription	Hela-S3	cervix
19	chr8:59326600-59348800	Weak transcription	Small Intestine	intestine
20	chr8:59326600-59353400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr8:59326600-59361400	Weak transcription	Fetal Brain Male	brain
22	chr8:59326600-59366200	Weak transcription	Gastric	stomach
23	chr8:59327000-59352600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr8:59332200-59349000	Weak transcription	HSMM	muscle
25	chr8:59332400-59347400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr8:59332600-59343800	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr8:59332600-59347400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr8:59332600-59352600	Weak transcription	Brain Substantia Nigra	brain
29	chr8:59332600-59354200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr8:59332600-59364800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr8:59334400-59364200	Weak transcription	HMEC	breast
32	chr8:59334600-59354200	Weak transcription	NHEK	skin
33	chr8:59335000-59356400	Weak transcription	Stomach Mucosa	stomach
34	chr8:59335200-59352800	Weak transcription	Colonic Mucosa	Colon
35	chr8:59335800-59347000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr8:59335800-59347200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr8:59335800-59349000	Weak transcription	A549	lung
38	chr8:59335800-59354600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr8:59336000-59346000	Weak transcription	HepG2	liver
40	chr8:59336000-59347400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr8:59336000-59347800	Weak transcription	Fetal Muscle Leg	muscle
42	chr8:59336000-59349000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr8:59336000-59349000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr8:59336000-59352800	Weak transcription	Placenta	Placenta
45	chr8:59336000-59354200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr8:59336000-59361400	Weak transcription	Spleen	Spleen
47	chr8:59336000-59364800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr8:59336000-59366600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr8:59336600-59343600	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr8:59336600-59360800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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