Variant report

Variant	rs10111761
Chromosome Location	chr8:59350322-59350323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10095270	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100741	0.85[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.95[LWK][hapmap];0.85[MEX][hapmap];0.96[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10105913	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108817	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10110824	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11552203	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251671	0.94[ASN][1000 genomes]
rs13252159	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13255706	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.83[TSI][hapmap];0.85[YRI][hapmap]
rs13271316	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13271916	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13274906	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs13277110	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1469338	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17202769	0.94[ASN][1000 genomes]
rs17202790	0.94[ASN][1000 genomes]
rs17261333	0.81[ASN][1000 genomes]
rs17261550	1.00[CHB][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35476562	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4599797	0.80[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.91[TSI][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67257878	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10111761	CLVS1	cis	parietal	SCAN

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59324800-59352000	Weak transcription	HSMMtube	muscle
2	chr8:59324800-59362000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:59325000-59352600	Weak transcription	Fetal Kidney	kidney
4	chr8:59325000-59357600	Weak transcription	NHLF	lung
5	chr8:59325000-59360000	Weak transcription	Right Ventricle	heart
6	chr8:59325000-59361200	Weak transcription	Psoas Muscle	Psoas
7	chr8:59325200-59351200	Weak transcription	K562	blood
8	chr8:59325200-59370800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr8:59325400-59351400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr8:59325800-59353200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr8:59325800-59363200	Weak transcription	Hela-S3	cervix
12	chr8:59326600-59353400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr8:59326600-59361400	Weak transcription	Fetal Brain Male	brain
14	chr8:59326600-59366200	Weak transcription	Gastric	stomach
15	chr8:59327000-59352600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr8:59332600-59352600	Weak transcription	Brain Substantia Nigra	brain
17	chr8:59332600-59354200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:59332600-59364800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr8:59334400-59364200	Weak transcription	HMEC	breast
20	chr8:59334600-59354200	Weak transcription	NHEK	skin
21	chr8:59335000-59356400	Weak transcription	Stomach Mucosa	stomach
22	chr8:59335200-59352800	Weak transcription	Colonic Mucosa	Colon
23	chr8:59335800-59354600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:59336000-59352800	Weak transcription	Placenta	Placenta
25	chr8:59336000-59354200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr8:59336000-59361400	Weak transcription	Spleen	Spleen
27	chr8:59336000-59364800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr8:59336000-59366600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr8:59336600-59360800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr8:59337800-59363200	Weak transcription	Pancreas	Pancrea
31	chr8:59338400-59352800	Weak transcription	Brain Anterior Caudate	brain
32	chr8:59338600-59352200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr8:59338600-59352600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr8:59338600-59354600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr8:59339400-59352800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr8:59339400-59354000	Weak transcription	Fetal Intestine Large	intestine
37	chr8:59339600-59363400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr8:59340000-59350600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr8:59340000-59352400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr8:59340000-59353600	Weak transcription	Esophagus	oesophagus
41	chr8:59340000-59354400	Weak transcription	Colon Smooth Muscle	Colon
42	chr8:59340600-59354400	Strong transcription	Primary B cells from cord blood	blood
43	chr8:59342200-59350600	Weak transcription	Lung	lung
44	chr8:59342200-59352800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr8:59342200-59354400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr8:59342200-59355400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr8:59342200-59366200	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr8:59342400-59365400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr8:59343000-59354200	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr8:59343400-59353600	Strong transcription	Primary monocytes fromperipheralblood	blood

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