Variant report

Variant	rs10095270
Chromosome Location	chr8:59352898-59352899
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59322895..59325510-chr8:59352539..59354689,2	K562	blood:

Variant related genes	Relation type
ENSG00000215114	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10100741	0.84[AFR][1000 genomes]
rs10105913	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108817	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10110824	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10111761	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11552203	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251671	0.94[ASN][1000 genomes]
rs13252159	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13271316	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13271916	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277110	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1469338	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17202769	0.94[ASN][1000 genomes]
rs17202790	0.94[ASN][1000 genomes]
rs17261333	0.81[ASN][1000 genomes]
rs17261550	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35476562	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4599797	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67257878	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59324800-59362000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:59325000-59357600	Weak transcription	NHLF	lung
3	chr8:59325000-59360000	Weak transcription	Right Ventricle	heart
4	chr8:59325000-59361200	Weak transcription	Psoas Muscle	Psoas
5	chr8:59325200-59370800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr8:59325800-59353200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr8:59325800-59363200	Weak transcription	Hela-S3	cervix
8	chr8:59326600-59353400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:59326600-59361400	Weak transcription	Fetal Brain Male	brain
10	chr8:59326600-59366200	Weak transcription	Gastric	stomach
11	chr8:59332600-59354200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:59332600-59364800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr8:59334400-59364200	Weak transcription	HMEC	breast
14	chr8:59334600-59354200	Weak transcription	NHEK	skin
15	chr8:59335000-59356400	Weak transcription	Stomach Mucosa	stomach
16	chr8:59335800-59354600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:59336000-59354200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr8:59336000-59361400	Weak transcription	Spleen	Spleen
19	chr8:59336000-59364800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr8:59336000-59366600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr8:59336600-59360800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr8:59337800-59363200	Weak transcription	Pancreas	Pancrea
23	chr8:59338600-59354600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr8:59339400-59354000	Weak transcription	Fetal Intestine Large	intestine
25	chr8:59339600-59363400	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr8:59340000-59353600	Weak transcription	Esophagus	oesophagus
27	chr8:59340000-59354400	Weak transcription	Colon Smooth Muscle	Colon
28	chr8:59340600-59354400	Strong transcription	Primary B cells from cord blood	blood
29	chr8:59342200-59354400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr8:59342200-59355400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr8:59342200-59366200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr8:59342400-59365400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr8:59343000-59354200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr8:59343400-59353600	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr8:59343600-59354400	Weak transcription	Fetal Heart	heart
36	chr8:59343600-59357600	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr8:59344000-59354000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr8:59344400-59355800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr8:59345400-59353400	Strong transcription	Primary T cells from cord blood	blood
40	chr8:59345600-59354200	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr8:59347400-59354400	Weak transcription	HepG2	liver
42	chr8:59349200-59354200	Weak transcription	Small Intestine	intestine
43	chr8:59349400-59353600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr8:59349600-59354200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr8:59349600-59354400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr8:59349600-59361600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr8:59349800-59354200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr8:59349800-59354200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr8:59349800-59354200	Weak transcription	Brain Hippocampus Middle	brain
50	chr8:59349800-59354400	Weak transcription	HSMM	muscle

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