Variant report

Variant	rs13271916
Chromosome Location	chr8:59366934-59366935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10095270	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100741	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.84[LWK][hapmap];0.85[MEX][hapmap]
rs10105913	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108817	0.88[ASN][1000 genomes]
rs10110824	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs10111761	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11552203	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251671	0.94[ASN][1000 genomes]
rs13252159	0.88[ASN][1000 genomes]
rs13255706	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap]
rs13271316	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs13274906	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs13277110	0.88[ASN][1000 genomes]
rs1469338	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17202769	0.94[ASN][1000 genomes]
rs17202790	0.94[ASN][1000 genomes]
rs17261333	0.81[ASN][1000 genomes]
rs17261550	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs35476562	0.88[ASN][1000 genomes]
rs4599797	0.85[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67257878	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13271916	CLVS1	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59325200-59370800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr8:59349800-59370800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:59353800-59370400	Weak transcription	Esophagus	oesophagus
4	chr8:59354800-59367000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:59354800-59370200	Weak transcription	HSMM	muscle
6	chr8:59355800-59369600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:59361800-59369600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr8:59362000-59369000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:59362200-59370200	Weak transcription	Aorta	Aorta
10	chr8:59362600-59369600	Weak transcription	HSMMtube	muscle
11	chr8:59363000-59368400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:59364800-59369600	Weak transcription	HMEC	breast
13	chr8:59365000-59369600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:59365000-59369800	Weak transcription	NHEK	skin
15	chr8:59365000-59370000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr8:59365400-59367400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr8:59365800-59367000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr8:59366200-59367000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr8:59366600-59367000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr8:59366800-59367000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr8:59366800-59368600	Weak transcription	Liver	Liver

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