Variant report
| Variant | rs13255706 |
|---|---|
| Chromosome Location | chr8:59317531-59317532 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:59311565..59318408-chr8:59321093..59327197,8 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000215114 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10100741 | 0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.85[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10108817 | 0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10110824 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10111761 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.83[TSI][hapmap];0.85[YRI][hapmap] |
| rs13252159 | 0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13260971 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13271316 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13274906 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13277110 | 0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1469338 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.83[TSI][hapmap];0.85[YRI][hapmap] |
| rs17261333 | 0.81[ASN][1000 genomes] |
| rs17261550 | 1.00[CHB][hapmap];0.86[YRI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs35476562 | 0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4599797 | 0.93[CEU][hapmap];0.89[GIH][hapmap];0.82[YRI][hapmap] |
| rs66487220 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs66804785 | 0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2757275 | chr8:59305290-59342331 | Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | n/a |
| 2 | esv2759619 | chr8:59305290-59342331 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | n/a |
| 3 | nsv438058 | chr8:59305833-59318448 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer | Chromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:59317200-59317600 | Enhancers | Primary neutrophils fromperipheralblood | blood |
