Variant report

Variant	rs17202790
Chromosome Location	chr8:59386544-59386545
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10087236	0.80[EUR][1000 genomes]
rs10095270	0.94[ASN][1000 genomes]
rs10105411	0.80[EUR][1000 genomes]
rs10105913	0.94[ASN][1000 genomes]
rs10108817	0.82[ASN][1000 genomes]
rs10110824	0.82[ASN][1000 genomes]
rs10111761	0.94[ASN][1000 genomes]
rs11552203	0.94[ASN][1000 genomes]
rs13251671	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13252159	0.82[ASN][1000 genomes]
rs13271316	0.82[ASN][1000 genomes]
rs13271916	0.94[ASN][1000 genomes]
rs13277110	0.82[ASN][1000 genomes]
rs1469338	0.94[ASN][1000 genomes]
rs17202769	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17261550	0.82[ASN][1000 genomes]
rs34828061	0.92[EUR][1000 genomes]
rs35476562	0.82[ASN][1000 genomes]
rs67257878	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59382000-59386600	Enhancers	Liver	Liver
2	chr8:59385600-59389200	Weak transcription	HepG2	liver
3	chr8:59385800-59386600	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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