Variant report

Variant	rs34828061
Chromosome Location	chr8:59382169-59382170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10086874	0.81[EUR][1000 genomes]
rs10087236	0.84[EUR][1000 genomes]
rs10105411	0.84[EUR][1000 genomes]
rs13251671	0.92[EUR][1000 genomes]
rs16923502	0.83[ASN][1000 genomes]
rs16923506	0.84[ASN][1000 genomes]
rs17202769	0.92[EUR][1000 genomes]
rs17202790	0.92[EUR][1000 genomes]
rs57749758	0.81[ASN][1000 genomes]
rs6996431	0.84[ASN][1000 genomes]
rs7016739	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59379400-59382400	Weak transcription	HepG2	liver
2	chr8:59379400-59384600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:59381800-59382400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr8:59382000-59382400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr8:59382000-59382400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:59382000-59382400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:59382000-59382400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:59382000-59382400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:59382000-59382400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:59382000-59382400	Enhancers	Esophagus	oesophagus
11	chr8:59382000-59382400	Enhancers	NHEK	skin
12	chr8:59382000-59386600	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links