Variant report

Variant	rs6996431
Chromosome Location	chr8:59375487-59375488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16923442	1.00[EUR][1000 genomes]
rs16923455	1.00[EUR][1000 genomes]
rs16923457	1.00[EUR][1000 genomes]
rs16923502	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16923506	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16923510	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34828061	0.84[ASN][1000 genomes]
rs57465869	1.00[EUR][1000 genomes]
rs57749758	0.94[ASN][1000 genomes]
rs59206925	0.90[ASN][1000 genomes]
rs59858156	1.00[EUR][1000 genomes]
rs7016739	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7822723	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59368400-59376400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:59372600-59382000	Weak transcription	Liver	Liver
3	chr8:59373800-59377400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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