Variant report

Variant	rs16923506
Chromosome Location	chr8:59390497-59390498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12675674	0.80[AMR][1000 genomes]
rs16923375	0.80[AMR][1000 genomes]
rs16923442	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923455	0.93[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923457	1.00[ASW][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923502	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16923510	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34828061	0.84[ASN][1000 genomes]
rs57465869	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57749758	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59152897	0.90[AMR][1000 genomes]
rs59206925	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59858156	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6996431	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7016739	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7822723	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7825751	1.00[TSI][hapmap]
rs8192873	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16923506	DKFZP434H168	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59390000-59391200	Flanking Active TSS	Liver	Liver
2	chr8:59390200-59391800	Flanking Active TSS	HepG2	liver
3	chr8:59390400-59391400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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