Variant report

Variant	rs16923457
Chromosome Location	chr8:59341873-59341874
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:59330587..59332964-chr8:59341422..59343603,3	K562	blood:
2	chr8:59330587..59332964-chr8:59341646..59343603,2	K562	blood:
3	chr8:59322458..59324243-chr8:59339227..59342124,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000215114	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12675674	0.90[AMR][1000 genomes]
rs16923375	0.90[AMR][1000 genomes]
rs16923442	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16923455	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923506	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923510	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57465869	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57749758	1.00[AMR][1000 genomes]
rs59152897	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59206925	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59858156	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6996431	1.00[EUR][1000 genomes]
rs7016739	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7822723	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192873	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757275	chr8:59305290-59342331	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
2	esv2759619	chr8:59305290-59342331	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59324800-59352000	Weak transcription	HSMMtube	muscle
2	chr8:59324800-59362000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:59325000-59348800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:59325000-59352600	Weak transcription	Fetal Kidney	kidney
5	chr8:59325000-59357600	Weak transcription	NHLF	lung
6	chr8:59325000-59360000	Weak transcription	Right Ventricle	heart
7	chr8:59325000-59361200	Weak transcription	Psoas Muscle	Psoas
8	chr8:59325200-59351200	Weak transcription	K562	blood
9	chr8:59325200-59370800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr8:59325400-59349000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:59325400-59351400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr8:59325600-59348600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr8:59325600-59348800	Weak transcription	Brain Angular Gyrus	brain
14	chr8:59325800-59342200	Weak transcription	Fetal Heart	heart
15	chr8:59325800-59343400	Weak transcription	Brain Hippocampus Middle	brain
16	chr8:59325800-59345200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr8:59325800-59347600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr8:59325800-59353200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr8:59325800-59363200	Weak transcription	Hela-S3	cervix
20	chr8:59326600-59348800	Weak transcription	Small Intestine	intestine
21	chr8:59326600-59353400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr8:59326600-59361400	Weak transcription	Fetal Brain Male	brain
23	chr8:59326600-59366200	Weak transcription	Gastric	stomach
24	chr8:59327000-59352600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr8:59332200-59349000	Weak transcription	HSMM	muscle
26	chr8:59332400-59347400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr8:59332600-59343800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr8:59332600-59347400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr8:59332600-59352600	Weak transcription	Brain Substantia Nigra	brain
30	chr8:59332600-59354200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr8:59332600-59364800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr8:59334400-59364200	Weak transcription	HMEC	breast
33	chr8:59334600-59354200	Weak transcription	NHEK	skin
34	chr8:59335000-59356400	Weak transcription	Stomach Mucosa	stomach
35	chr8:59335200-59352800	Weak transcription	Colonic Mucosa	Colon
36	chr8:59335800-59347000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr8:59335800-59347200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr8:59335800-59349000	Weak transcription	A549	lung
39	chr8:59335800-59354600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr8:59336000-59342000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr8:59336000-59346000	Weak transcription	HepG2	liver
42	chr8:59336000-59347400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr8:59336000-59347800	Weak transcription	Fetal Muscle Leg	muscle
44	chr8:59336000-59349000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr8:59336000-59349000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr8:59336000-59352800	Weak transcription	Placenta	Placenta
47	chr8:59336000-59354200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr8:59336000-59361400	Weak transcription	Spleen	Spleen
49	chr8:59336000-59364800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr8:59336000-59366600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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