Variant report

Variant	rs7016739
Chromosome Location	chr8:59375460-59375461
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12675674	0.80[AMR][1000 genomes]
rs16923375	0.80[AMR][1000 genomes]
rs16923442	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923455	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923457	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923502	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16923506	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16923510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34828061	0.82[ASN][1000 genomes]
rs57465869	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57749758	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs59152897	0.90[AMR][1000 genomes]
rs59206925	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs59858156	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6996431	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7822723	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8192873	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59368400-59376400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:59372600-59382000	Weak transcription	Liver	Liver
3	chr8:59373800-59377400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links