Variant report

Variant	rs16923442
Chromosome Location	chr8:59324403-59324404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:59323416..59326297-chr8:59327025..59332667,5	K562	blood:
2	chr8:59323669..59325848-chr8:59328991..59330668,2	K562	blood:
3	chr8:59323970..59326918-chr8:59333459..59336402,2	K562	blood:

Variant related genes	Relation type
ENSG00000215114	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12675674	0.90[AMR][1000 genomes]
rs16923375	0.90[AMR][1000 genomes]
rs16923455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16923457	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16923502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923506	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923510	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57465869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57749758	1.00[AMR][1000 genomes]
rs59152897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59206925	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59858156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6996431	1.00[EUR][1000 genomes]
rs7016739	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7822723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8192873	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757275	chr8:59305290-59342331	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
2	esv2759619	chr8:59305290-59342331	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59323400-59324600	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr8:59323400-59324600	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr8:59323400-59324600	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr8:59323400-59324600	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr8:59323400-59324600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:59323400-59324600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:59323400-59324600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
8	chr8:59323400-59324600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:59323400-59324600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:59323400-59324600	Active TSS	Adipose Nuclei	Adipose
11	chr8:59323400-59324600	Active TSS	Aorta	Aorta
12	chr8:59323400-59324600	Active TSS	Brain Hippocampus Middle	brain
13	chr8:59323400-59324600	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr8:59323400-59324600	Active TSS	Esophagus	oesophagus
15	chr8:59323400-59324600	Active TSS	Fetal Heart	heart
16	chr8:59323400-59324600	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr8:59323400-59324600	Active TSS	Fetal Muscle Trunk	muscle
18	chr8:59323400-59324600	Active TSS	Fetal Muscle Leg	muscle
19	chr8:59323400-59324600	Bivalent/Poised TSS	HepG2	liver
20	chr8:59323400-59324600	Active TSS	HSMM	muscle
21	chr8:59323400-59324600	Active TSS	HSMMtube	muscle
22	chr8:59323400-59324600	Active TSS	NHEK	skin
23	chr8:59323400-59324800	Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr8:59323400-59324800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr8:59323400-59324800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr8:59323400-59324800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr8:59323400-59324800	Active TSS	HUES6 Cell Line	embryonic stem cell
28	chr8:59323400-59324800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:59323400-59324800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:59323400-59324800	Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr8:59323400-59324800	Active TSS	Muscle Satellite Cultured Cells	--
32	chr8:59323400-59324800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr8:59323400-59324800	Active TSS	Brain Angular Gyrus	brain
34	chr8:59323400-59324800	Active TSS	Brain Cingulate Gyrus	brain
35	chr8:59323400-59324800	Active TSS	Brain Inferior Temporal Lobe	brain
36	chr8:59323400-59324800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr8:59323400-59324800	Active TSS	Brain Substantia Nigra	brain
38	chr8:59323400-59324800	Active TSS	Fetal Kidney	kidney
39	chr8:59323400-59324800	Active TSS	Fetal Stomach	stomach
40	chr8:59323400-59324800	Active TSS	Rectal Mucosa Donor 31	rectum
41	chr8:59323400-59324800	Active TSS	Stomach Smooth Muscle	stomach
42	chr8:59323400-59324800	Active TSS	HMEC	breast
43	chr8:59323400-59324800	Active TSS	NHDF-Ad	bronchial
44	chr8:59323400-59325000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr8:59323400-59325000	Active TSS	Colonic Mucosa	Colon
46	chr8:59323400-59325000	Active TSS	Fetal Brain Male	brain
47	chr8:59323400-59325000	Active TSS	Fetal Brain Female	brain
48	chr8:59323400-59325000	Active TSS	Ovary	ovary
49	chr8:59323400-59325000	Active TSS	Psoas Muscle	Psoas
50	chr8:59323400-59325000	Active TSS	Right Atrium	heart

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