Variant report

Variant	rs10105913
Chromosome Location	chr8:59367637-59367638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10095270	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108817	0.88[ASN][1000 genomes]
rs10110824	0.88[ASN][1000 genomes]
rs10111761	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11552203	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251671	0.94[ASN][1000 genomes]
rs13252159	0.88[ASN][1000 genomes]
rs13271316	0.88[ASN][1000 genomes]
rs13271916	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13277110	0.88[ASN][1000 genomes]
rs1469338	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17202769	0.94[ASN][1000 genomes]
rs17202790	0.94[ASN][1000 genomes]
rs17261333	0.81[ASN][1000 genomes]
rs17261550	0.88[ASN][1000 genomes]
rs35476562	0.88[ASN][1000 genomes]
rs4599797	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67257878	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59325200-59370800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr8:59349800-59370800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:59353800-59370400	Weak transcription	Esophagus	oesophagus
4	chr8:59354800-59370200	Weak transcription	HSMM	muscle
5	chr8:59355800-59369600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:59361800-59369600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr8:59362000-59369000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:59362200-59370200	Weak transcription	Aorta	Aorta
9	chr8:59362600-59369600	Weak transcription	HSMMtube	muscle
10	chr8:59363000-59368400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:59364800-59369600	Weak transcription	HMEC	breast
12	chr8:59365000-59369600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:59365000-59369800	Weak transcription	NHEK	skin
14	chr8:59365000-59370000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:59366800-59368600	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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