Variant report

Variant	rs6471699
Chromosome Location	chr8:59209919-59209920
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59208050..59210067-chr8:59212909..59214826,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10098029	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10099695	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10108483	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10435569	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10808692	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12550314	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1551544	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2925657	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2925660	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2925662	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2925666	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2925671	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970740	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970741	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2970754	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2970755	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2970756	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2970758	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2970765	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2970766	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36073271	0.88[ASN][1000 genomes]
rs4072993	0.98[ASN][1000 genomes]
rs4237027	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4237028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4259404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4298479	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4336601	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4342578	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4373506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4385457	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4406384	0.98[ASN][1000 genomes]
rs4478561	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4526346	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4538862	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4562301	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4563874	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737492	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4738657	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4738658	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4738661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60231854	0.94[ASN][1000 genomes]
rs60422963	0.94[ASN][1000 genomes]
rs6471697	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6471701	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982876	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6993120	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7002531	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.98[ASN][1000 genomes]
rs7008300	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7008385	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7008471	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7010972	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs733665	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7815702	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7829799	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7830292	0.98[ASN][1000 genomes]
rs7845693	0.98[ASN][1000 genomes]
rs9297988	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761427	chr8:59204373-59242564	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59209200-59210000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:59209200-59211000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:59209400-59210000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:59209400-59210400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr8:59209400-59210800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:59209600-59210600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:59209800-59210800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:59209800-59211000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr8:59209800-59211200	Enhancers	HUES64 Cell Line	embryonic stem cell

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