Variant report

Variant	rs4342578
Chromosome Location	chr8:59190676-59190677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10098029	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10099695	0.87[ASN][1000 genomes]
rs10108483	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10435569	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10808692	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12550314	0.89[ASN][1000 genomes]
rs2925657	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2925660	0.89[ASN][1000 genomes]
rs2925666	0.87[ASN][1000 genomes]
rs2925671	0.98[ASN][1000 genomes]
rs2970740	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2970741	0.98[ASN][1000 genomes]
rs2970754	0.90[ASN][1000 genomes]
rs2970755	0.83[ASN][1000 genomes]
rs2970756	0.87[ASN][1000 genomes]
rs2970758	0.89[ASN][1000 genomes]
rs2970765	0.89[ASN][1000 genomes]
rs2970766	0.89[ASN][1000 genomes]
rs36073271	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4072993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237027	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4237028	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4259404	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4298479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4336601	0.98[ASN][1000 genomes]
rs4373506	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4385457	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4406384	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4478561	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4526346	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4538862	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4562301	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4563874	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4737492	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4738657	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4738658	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4738661	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4738662	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4738664	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs60231854	0.96[ASN][1000 genomes]
rs60422963	0.96[ASN][1000 genomes]
rs6471697	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6471699	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6471701	0.98[ASN][1000 genomes]
rs6982876	0.98[ASN][1000 genomes]
rs6993120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7002531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008300	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008385	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7008471	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7010972	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs733665	0.87[ASN][1000 genomes]
rs7815702	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7821169	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7829799	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830292	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7845693	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4342578	C8orf72	cis	multi-tissue	Pritchard

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59185400-59193200	Weak transcription	Spleen	Spleen
2	chr8:59185400-59195800	Weak transcription	Right Atrium	heart
3	chr8:59187200-59191600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:59187600-59190800	Enhancers	HSMM	muscle
5	chr8:59188200-59193400	Enhancers	Fetal Muscle Leg	muscle
6	chr8:59188400-59192200	Weak transcription	Brain Germinal Matrix	brain
7	chr8:59188400-59192200	Weak transcription	Fetal Lung	lung
8	chr8:59188800-59192600	Weak transcription	Adipose Nuclei	Adipose
9	chr8:59189800-59191600	Enhancers	Fetal Muscle Trunk	muscle
10	chr8:59190000-59191400	Enhancers	Gastric	stomach
11	chr8:59190000-59192800	Enhancers	Fetal Stomach	stomach
12	chr8:59190200-59191600	Enhancers	Hela-S3	cervix
13	chr8:59190400-59190800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr8:59190400-59190800	Enhancers	Placenta	Placenta
15	chr8:59190400-59190800	Enhancers	Pancreas	Pancrea
16	chr8:59190400-59191600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:59190400-59191600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:59190400-59191800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:59190600-59192200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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