Variant report

Variant	rs10108483
Chromosome Location	chr8:59195772-59195773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10098029	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10099695	0.89[ASN][1000 genomes]
rs10435569	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808692	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12550314	0.91[ASN][1000 genomes]
rs1551544	0.81[ASN][1000 genomes]
rs2925657	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2925660	0.91[ASN][1000 genomes]
rs2925666	0.89[ASN][1000 genomes]
rs2925671	1.00[ASN][1000 genomes]
rs2970740	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2970741	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2970754	0.92[ASN][1000 genomes]
rs2970755	0.85[ASN][1000 genomes]
rs2970756	0.89[ASN][1000 genomes]
rs2970758	0.91[ASN][1000 genomes]
rs2970765	0.91[ASN][1000 genomes]
rs2970766	0.91[ASN][1000 genomes]
rs36073271	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4072993	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4237027	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237028	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4259404	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4298479	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4336601	1.00[ASN][1000 genomes]
rs4342578	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4373506	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4385457	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4406384	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4478561	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4526346	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4538862	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4562301	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4563874	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4737492	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738657	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738658	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4738661	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4738662	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4738664	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60231854	0.94[ASN][1000 genomes]
rs60422963	0.94[ASN][1000 genomes]
rs6471697	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471699	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6471701	1.00[ASN][1000 genomes]
rs6982876	1.00[ASN][1000 genomes]
rs6993120	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7002531	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7008300	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7008385	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008471	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010972	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733665	0.89[ASN][1000 genomes]
rs7815702	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821169	0.85[EUR][1000 genomes]
rs7829799	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7830292	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7845693	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9297988	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10108483	C8orf72	cis	multi-tissue	Pritchard

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59185400-59195800	Weak transcription	Right Atrium	heart
2	chr8:59191400-59196000	Weak transcription	Gastric	stomach
3	chr8:59191600-59195800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:59191600-59196200	Weak transcription	Hela-S3	cervix
5	chr8:59193600-59195800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:59194200-59195800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:59195000-59196400	Enhancers	HepG2	liver
8	chr8:59195200-59195800	Weak transcription	Pancreas	Pancrea
9	chr8:59195400-59196200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:59195400-59197200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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