Variant report

Variant	rs2925662
Chromosome Location	chr8:59251676-59251677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10099695	0.95[EUR][1000 genomes]
rs10435569	0.82[AMR][1000 genomes]
rs12550314	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1551544	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2925657	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2925660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2925663	0.82[EUR][1000 genomes]
rs2925666	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2925671	0.89[EUR][1000 genomes]
rs2970740	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2970741	0.87[AMR][1000 genomes]
rs2970754	0.93[EUR][1000 genomes]
rs2970755	0.92[EUR][1000 genomes]
rs2970756	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2970758	1.00[EUR][1000 genomes]
rs2970765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2970766	1.00[EUR][1000 genomes]
rs4237028	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4259404	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4298479	1.00[JPT][hapmap];0.81[TSI][hapmap]
rs4336601	0.89[EUR][1000 genomes]
rs4373506	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4526346	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4562301	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4563874	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4738661	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4738662	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4738664	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6471697	0.82[AMR][1000 genomes]
rs6471699	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6471701	0.88[EUR][1000 genomes]
rs6982876	0.81[EUR][1000 genomes]
rs6993120	1.00[JPT][hapmap]
rs7002531	1.00[JPT][hapmap]
rs7010972	0.82[AMR][1000 genomes]
rs733665	1.00[EUR][1000 genomes]
rs747401	0.83[EUR][1000 genomes]
rs7815702	0.82[AMR][1000 genomes]
rs9297988	1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2925662	C8orf72	cis	multi-tissue	Pritchard

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59249800-59255200	Weak transcription	Right Ventricle	heart
2	chr8:59250400-59251800	Weak transcription	Fetal Heart	heart
3	chr8:59250600-59254800	Weak transcription	Liver	Liver
4	chr8:59251400-59252000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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