Variant report

Variant	rs7009513
Chromosome Location	chr8:10284051-10284052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10277398..10280414-chr8:10281254..10284079,3	K562	blood:
2	chr8:10281970..10284229-chr8:10318464..10320467,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10112584	0.86[GIH][hapmap];0.87[MEX][hapmap]
rs10113408	0.86[GIH][hapmap]
rs11250008	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12677754	0.82[JPT][hapmap]
rs13249940	0.88[GIH][hapmap]
rs1986973	0.81[GIH][hapmap]
rs3750314	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3750315	0.97[GIH][hapmap];0.86[MEX][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4304332	0.90[AFR][1000 genomes]
rs4503103	0.92[AFR][1000 genomes]
rs4841331	0.81[GIH][hapmap]
rs7005363	0.91[CHB][hapmap];0.98[CHD][hapmap];0.90[ASN][1000 genomes]
rs7015777	0.82[JPT][hapmap]
rs72603904	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7821432	1.00[CEU][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes]
rs7832699	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv527326	chr8:10199548-10320019	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv465460	chr8:10241411-10290566	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv610265	chr8:10241411-10290566	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv610266	chr8:10250758-10294330	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv890348	chr8:10265712-10289663	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv610267	chr8:10268736-10526742	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10276000-10290400	Weak transcription	Fetal Intestine Large	intestine
2	chr8:10276000-10293600	Weak transcription	Brain Substantia Nigra	brain
3	chr8:10281000-10287200	Enhancers	Fetal Brain Male	brain
4	chr8:10281400-10284600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:10281800-10285000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:10282200-10285400	Enhancers	Brain Angular Gyrus	brain
7	chr8:10282200-10285400	Enhancers	Fetal Muscle Leg	muscle
8	chr8:10282400-10284400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr8:10282400-10284800	Flanking Active TSS	Stomach Smooth Muscle	stomach
10	chr8:10282400-10285600	Enhancers	Brain Cingulate Gyrus	brain
11	chr8:10282600-10284200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:10282600-10284200	Enhancers	Adipose Nuclei	Adipose
13	chr8:10282600-10284600	Enhancers	Fetal Heart	heart
14	chr8:10282600-10284600	Enhancers	Ovary	ovary
15	chr8:10282600-10284800	Enhancers	NHLF	lung
16	chr8:10282600-10285200	Enhancers	Brain Hippocampus Middle	brain
17	chr8:10282600-10295200	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr8:10282800-10284200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr8:10282800-10285200	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr8:10282800-10285200	Weak transcription	Lung	lung
21	chr8:10282800-10293800	Weak transcription	Primary T cells from cord blood	blood
22	chr8:10283000-10284200	Flanking Active TSS	Colon Smooth Muscle	Colon
23	chr8:10283000-10284400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr8:10283000-10284800	Enhancers	Brain Germinal Matrix	brain
25	chr8:10283000-10285000	Enhancers	Fetal Muscle Trunk	muscle
26	chr8:10283000-10285400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr8:10283000-10291200	Weak transcription	Pancreas	Pancrea
28	chr8:10283200-10284600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:10283200-10285400	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr8:10283200-10285600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr8:10283200-10287600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr8:10283200-10288600	Weak transcription	Right Ventricle	heart
33	chr8:10283200-10290800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr8:10283200-10291800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr8:10283200-10291800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr8:10283200-10293600	Weak transcription	Left Ventricle	heart
37	chr8:10283200-10294000	Weak transcription	Gastric	stomach
38	chr8:10283200-10295200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr8:10283400-10288200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr8:10283400-10291200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:10283600-10284200	Flanking Active TSS	Fetal Brain Female	brain
42	chr8:10283600-10284200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr8:10283600-10284600	Weak transcription	Spleen	Spleen
44	chr8:10283600-10285400	Enhancers	Fetal Stomach	stomach
45	chr8:10283800-10284200	Flanking Active TSS	Fetal Lung	lung
46	chr8:10283800-10285200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr8:10283800-10285800	Strong transcription	Fetal Intestine Small	intestine
48	chr8:10283800-10287200	Strong transcription	Liver	Liver
49	chr8:10284000-10284200	Enhancers	Brain Anterior Caudate	brain
50	chr8:10284000-10284400	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links