Variant report
Variant | rs7012192 |
---|---|
Chromosome Location | chr8:113287151-113287152 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr8:113282212..113283944-chr8:113285167..113287640,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10447984 | 0.83[EUR][1000 genomes] |
rs11776765 | 0.80[CEU][hapmap] |
rs11777694 | 0.83[EUR][1000 genomes] |
rs11778806 | 0.83[EUR][1000 genomes] |
rs11778874 | 0.83[EUR][1000 genomes] |
rs11780719 | 0.83[EUR][1000 genomes] |
rs12155729 | 0.82[CHB][hapmap] |
rs12155759 | 0.80[CEU][hapmap] |
rs12680158 | 0.84[EUR][1000 genomes] |
rs1388963 | 0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1388965 | 0.83[EUR][1000 genomes] |
rs1472166 | 0.80[CEU][hapmap] |
rs1492670 | 0.84[CEU][hapmap] |
rs1492673 | 0.87[CHB][hapmap];0.95[JPT][hapmap] |
rs1492674 | 0.87[CHB][hapmap];0.95[JPT][hapmap] |
rs1492677 | 0.83[EUR][1000 genomes] |
rs1492678 | 0.82[JPT][hapmap];0.83[EUR][1000 genomes] |
rs1579262 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1602703 | 0.80[CEU][hapmap];0.82[EUR][1000 genomes] |
rs1602704 | 0.83[EUR][1000 genomes] |
rs16883350 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
rs16883510 | 0.84[CEU][hapmap] |
rs1907803 | 0.83[EUR][1000 genomes] |
rs1907804 | 0.83[EUR][1000 genomes] |
rs2035895 | 0.80[CEU][hapmap] |
rs2131298 | 0.82[JPT][hapmap];0.83[EUR][1000 genomes] |
rs28453001 | 0.92[ASN][1000 genomes] |
rs35282651 | 0.83[EUR][1000 genomes] |
rs3950676 | 0.82[JPT][hapmap];0.83[EUR][1000 genomes] |
rs41340951 | 0.83[EUR][1000 genomes] |
rs41467949 | 0.83[EUR][1000 genomes] |
rs4469486 | 0.90[CEU][hapmap] |
rs4577984 | 0.83[JPT][hapmap];0.83[EUR][1000 genomes] |
rs4876281 | 0.83[EUR][1000 genomes] |
rs4876283 | 0.80[CEU][hapmap] |
rs4876462 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs4876467 | 0.81[CHB][hapmap] |
rs4876469 | 0.80[CEU][hapmap] |
rs56064440 | 0.83[EUR][1000 genomes] |
rs56156694 | 0.83[EUR][1000 genomes] |
rs56276823 | 0.83[EUR][1000 genomes] |
rs56288817 | 0.83[EUR][1000 genomes] |
rs56403239 | 0.84[EUR][1000 genomes] |
rs58364548 | 0.83[EUR][1000 genomes] |
rs59156725 | 0.81[EUR][1000 genomes] |
rs59265979 | 0.83[EUR][1000 genomes] |
rs60340602 | 0.83[EUR][1000 genomes] |
rs61187653 | 0.83[EUR][1000 genomes] |
rs62514412 | 0.84[EUR][1000 genomes] |
rs62514414 | 0.83[EUR][1000 genomes] |
rs62514418 | 0.83[EUR][1000 genomes] |
rs62514434 | 0.83[EUR][1000 genomes] |
rs6469413 | 0.82[JPT][hapmap];0.85[EUR][1000 genomes] |
rs67822558 | 0.83[EUR][1000 genomes] |
rs7003500 | 0.82[JPT][hapmap];0.83[EUR][1000 genomes] |
rs7012257 | 0.83[EUR][1000 genomes] |
rs7012300 | 0.84[EUR][1000 genomes] |
rs7819634 | 0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7832317 | 0.80[CEU][hapmap] |
rs7838254 | 0.83[EUR][1000 genomes] |
rs7838616 | 0.83[EUR][1000 genomes] |
rs7838852 | 0.80[CEU][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes] |
rs7845628 | 0.82[JPT][hapmap] |
rs7845794 | 0.83[JPT][hapmap] |
rs963086 | 0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs990616 | 0.82[YRI][hapmap];0.80[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv533857 | chr8:112819659-113801258 | Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv1022457 | chr8:113071774-113811177 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
3 | esv2755868 | chr8:113282795-113634842 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | esv2753595 | chr8:113283214-114190390 | Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:113286000-113288400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |