Variant report

Variant	rs7012992
Chromosome Location	chr8:57841740-57841741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:57700194..57700857-chr8:57841589..57842125,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10504213	0.82[EUR][1000 genomes]
rs10958509	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10958511	0.82[EUR][1000 genomes]
rs11777431	0.81[EUR][1000 genomes]
rs11787472	0.82[EUR][1000 genomes]
rs1354970	0.82[EUR][1000 genomes]
rs1354971	0.82[EUR][1000 genomes]
rs1354972	0.81[EUR][1000 genomes]
rs1354973	0.82[EUR][1000 genomes]
rs1472871	0.82[EUR][1000 genomes]
rs16921348	0.81[EUR][1000 genomes]
rs16921349	0.84[EUR][1000 genomes]
rs16921352	0.84[EUR][1000 genomes]
rs16921391	0.82[EUR][1000 genomes]
rs2873556	1.00[CEU][hapmap]
rs4570152	0.81[EUR][1000 genomes]
rs55915041	0.82[EUR][1000 genomes]
rs56264228	0.81[EUR][1000 genomes]
rs56360630	0.81[EUR][1000 genomes]
rs57357857	0.81[EUR][1000 genomes]
rs58072329	0.82[EUR][1000 genomes]
rs60545677	0.82[EUR][1000 genomes]
rs6474089	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67984625	0.81[EUR][1000 genomes]
rs7008699	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72647042	0.81[EUR][1000 genomes]
rs72647043	0.81[EUR][1000 genomes]
rs73601978	0.84[EUR][1000 genomes]
rs7813182	0.82[EUR][1000 genomes]
rs7815777	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7816748	0.81[EUR][1000 genomes]
rs7817368	0.82[EUR][1000 genomes]
rs7820756	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7822936	0.82[EUR][1000 genomes]
rs7828428	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7830225	0.82[EUR][1000 genomes]
rs7830753	0.82[EUR][1000 genomes]
rs7831943	0.82[EUR][1000 genomes]
rs7832594	0.82[EUR][1000 genomes]
rs7835887	0.82[EUR][1000 genomes]
rs7836128	0.82[EUR][1000 genomes]
rs7838711	0.82[EUR][1000 genomes]
rs7843827	0.81[EUR][1000 genomes]
rs906538	0.82[EUR][1000 genomes]
rs965325	0.82[EUR][1000 genomes]
rs965326	0.82[EUR][1000 genomes]
rs965327	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029443	chr8:57748114-58057656	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:57831000-57849600	Weak transcription	Pancreas	Pancrea
2	chr8:57840400-57842200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:57841400-57841800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:57841400-57841800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:57841400-57841800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr8:57841400-57841800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:57841400-57841800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:57841600-57841800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:57841600-57841800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr8:57841600-57841800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:57841600-57841800	Enhancers	Brain Anterior Caudate	brain
12	chr8:57841600-57841800	Enhancers	Colon Smooth Muscle	Colon
13	chr8:57841600-57841800	Enhancers	Fetal Muscle Leg	muscle
14	chr8:57841600-57841800	Enhancers	NHLF	lung
15	chr8:57841600-57841800	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links