Variant report

Variant	rs1472871
Chromosome Location	chr8:57856692-57856693
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10003	0.84[ASN][1000 genomes]
rs1044731	0.86[ASN][1000 genomes]
rs10504213	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10958509	0.82[EUR][1000 genomes]
rs10958511	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11777431	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784432	0.81[ASN][1000 genomes]
rs11787472	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995249	0.81[ASN][1000 genomes]
rs12056416	0.81[ASN][1000 genomes]
rs12543933	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12546457	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1354970	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1354971	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1354972	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1354973	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16921348	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16921349	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16921352	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16921391	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16921401	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16921404	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16921483	0.81[ASN][1000 genomes]
rs16921485	0.81[ASN][1000 genomes]
rs2873556	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34317701	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35554964	0.83[ASN][1000 genomes]
rs35912151	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4570152	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55744759	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55915041	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56147332	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56264228	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56360630	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57357857	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58072329	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60545677	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474089	0.82[EUR][1000 genomes]
rs6474091	0.81[ASN][1000 genomes]
rs67984625	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7008699	0.82[EUR][1000 genomes]
rs7012992	0.82[EUR][1000 genomes]
rs72647042	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72647043	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72647048	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72647049	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73601978	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73681989	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7813182	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7813476	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7815777	0.82[EUR][1000 genomes]
rs7816748	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817368	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7820756	0.86[EUR][1000 genomes]
rs7822936	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830225	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7830753	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7831943	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7832594	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835887	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7836128	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838711	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843827	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs906538	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs965325	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965326	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965327	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029443	chr8:57748114-58057656	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:57856200-57858800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:57856600-57856800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:57856600-57856800	Enhancers	Brain Cingulate Gyrus	brain
4	chr8:57856600-57856800	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr8:57856600-57857000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:57856600-57857000	Enhancers	Brain Angular Gyrus	brain

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