Variant report

Variant	rs7014297
Chromosome Location	chr8:67330971-67330972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12545483	0.91[EUR][1000 genomes]
rs34077648	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58055402	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59339037	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61747714	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62511161	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62511162	1.00[AMR][1000 genomes]
rs62511166	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62511169	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62511171	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62511172	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62511173	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62511174	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62511177	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62511179	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62511184	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62511215	1.00[EUR][1000 genomes]
rs62511946	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62511948	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62511950	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62511951	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472272	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6989837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7002496	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7010555	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7015255	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7813259	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67328000-67333400	Weak transcription	Osteobl	bone
2	chr8:67329200-67331200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:67330000-67331000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:67330400-67331000	Enhancers	Brain Germinal Matrix	brain
5	chr8:67330800-67332600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr8:67330800-67332600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr8:67330800-67332800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr8:67330800-67332800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:67330800-67333000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:67330800-67333200	Weak transcription	NHDF-Ad	bronchial
11	chr8:67330800-67333600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:67330800-67333600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr8:67330800-67333800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr8:67330800-67333800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:67330800-67333800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:67330800-67334600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr8:67330800-67335200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr8:67330800-67337000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:67330800-67337000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:67330800-67340200	Weak transcription	Pancreas	Pancrea

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