Variant report

Variant	rs62511184
Chromosome Location	chr8:67351966-67351967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67351675..67353546-chr8:67976584..67978905,2	MCF-7	breast:
2	chr8:67344117..67347389-chr8:67347651..67352093,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104218	Chromatin interaction
ENSG00000147576	Chromatin interaction
ENSG00000121022	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12545483	0.91[EUR][1000 genomes]
rs34077648	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58055402	1.00[EUR][1000 genomes]
rs59339037	1.00[EUR][1000 genomes]
rs61747714	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62511161	1.00[EUR][1000 genomes]
rs62511166	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62511169	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62511171	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62511172	1.00[EUR][1000 genomes]
rs62511173	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62511174	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62511177	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62511179	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62511185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62511215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62511946	1.00[EUR][1000 genomes]
rs62511948	1.00[EUR][1000 genomes]
rs62511950	1.00[EUR][1000 genomes]
rs62511951	1.00[EUR][1000 genomes]
rs62512577	1.00[AMR][1000 genomes]
rs62512578	1.00[AMR][1000 genomes]
rs62512589	1.00[AMR][1000 genomes]
rs6472272	1.00[EUR][1000 genomes]
rs6989837	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002496	1.00[EUR][1000 genomes]
rs7010555	1.00[EUR][1000 genomes]
rs7014297	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7015255	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7813259	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67350800-67352600	Active TSS	Right Atrium	heart
2	chr8:67351000-67352000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
3	chr8:67351000-67352000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:67351000-67352000	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr8:67351000-67352000	Active TSS	Osteobl	bone
6	chr8:67351000-67352200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr8:67351000-67352200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr8:67351200-67352000	Active TSS	H9 Cell Line	embryonic stem cell
9	chr8:67351200-67352000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:67351200-67352000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
11	chr8:67351200-67352000	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
12	chr8:67351200-67352000	Flanking Active TSS	Fetal Muscle Leg	muscle
13	chr8:67351200-67352000	Active TSS	Psoas Muscle	Psoas
14	chr8:67351200-67352000	Bivalent/Poised TSS	Thymus	Thymus
15	chr8:67351200-67352200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
16	chr8:67351200-67352200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:67351200-67352200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr8:67351200-67352200	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr8:67351200-67352200	Active TSS	Aorta	Aorta
20	chr8:67351200-67352200	Active TSS	Colonic Mucosa	Colon
21	chr8:67351200-67352200	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr8:67351200-67352200	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr8:67351200-67352200	Flanking Active TSS	HUVEC	blood vessel
24	chr8:67351200-67352600	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr8:67351200-67352600	Active TSS	Stomach Smooth Muscle	stomach
26	chr8:67351400-67352000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr8:67351400-67352000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr8:67351400-67352000	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr8:67351400-67352000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr8:67351400-67352000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr8:67351400-67352000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
32	chr8:67351400-67352000	Flanking Active TSS	Primary hematopoietic stem cells	blood
33	chr8:67351400-67352000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
34	chr8:67351400-67352000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
35	chr8:67351400-67352000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
36	chr8:67351400-67352000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr8:67351400-67352000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
38	chr8:67351400-67352000	Active TSS	Brain Angular Gyrus	brain
39	chr8:67351400-67352000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr8:67351400-67352000	Active TSS	Brain Substantia Nigra	brain
41	chr8:67351400-67352000	Active TSS	Colon Smooth Muscle	Colon
42	chr8:67351400-67352000	Active TSS	Esophagus	oesophagus
43	chr8:67351400-67352000	Active TSS	Fetal Heart	heart
44	chr8:67351400-67352000	Active TSS	Fetal Intestine Small	intestine
45	chr8:67351400-67352000	Active TSS	Gastric	stomach
46	chr8:67351400-67352000	Active TSS	Left Ventricle	heart
47	chr8:67351400-67352000	Active TSS	Placenta Amnion	Placenta Amnion
48	chr8:67351400-67352000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
49	chr8:67351400-67352000	Flanking Active TSS	HMEC	breast
50	chr8:67351400-67352000	Active TSS	HSMMtube	muscle

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