Variant report

Variant	rs62512578
Chromosome Location	chr8:67408012-67408013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12541169	1.00[EUR][1000 genomes]
rs12546226	0.83[EUR][1000 genomes]
rs12547088	0.83[EUR][1000 genomes]
rs12674697	0.83[EUR][1000 genomes]
rs12674856	0.83[EUR][1000 genomes]
rs12676571	0.83[EUR][1000 genomes]
rs12680750	0.83[EUR][1000 genomes]
rs16932794	0.83[EUR][1000 genomes]
rs16932797	0.83[EUR][1000 genomes]
rs57145208	0.83[EUR][1000 genomes]
rs58426145	1.00[EUR][1000 genomes]
rs58730001	0.83[EUR][1000 genomes]
rs60505214	1.00[EUR][1000 genomes]
rs62511162	1.00[EUR][1000 genomes]
rs62511184	1.00[AMR][1000 genomes]
rs62511185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62511186	0.83[EUR][1000 genomes]
rs62511187	0.83[EUR][1000 genomes]
rs62511213	0.83[EUR][1000 genomes]
rs62511215	1.00[AMR][1000 genomes]
rs62511883	0.83[EUR][1000 genomes]
rs62511907	0.83[EUR][1000 genomes]
rs62511940	1.00[EUR][1000 genomes]
rs62512577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62512580	1.00[EUR][1000 genomes]
rs62512583	1.00[EUR][1000 genomes]
rs62512584	1.00[EUR][1000 genomes]
rs62512585	1.00[EUR][1000 genomes]
rs62512589	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6986855	1.00[EUR][1000 genomes]
rs7002969	0.83[EUR][1000 genomes]
rs7010810	0.83[EUR][1000 genomes]
rs7010964	0.83[EUR][1000 genomes]
rs7016951	0.83[EUR][1000 genomes]
rs7819028	0.83[EUR][1000 genomes]
rs7834454	0.83[EUR][1000 genomes]
rs7839082	0.83[EUR][1000 genomes]
rs7840104	0.83[EUR][1000 genomes]
rs7840490	0.83[EUR][1000 genomes]
rs9643397	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1026137	chr8:67376420-67408122	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67405200-67408200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:67405200-67408600	Active TSS	Brain Anterior Caudate	brain
3	chr8:67406800-67419400	Weak transcription	Liver	Liver
4	chr8:67407000-67409200	Weak transcription	Ovary	ovary
5	chr8:67407000-67417400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:67407200-67408200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr8:67407200-67410800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:67407200-67410800	Weak transcription	HSMM	muscle
9	chr8:67407200-67410800	Weak transcription	NH-A	brain
10	chr8:67407200-67410800	Weak transcription	Osteobl	bone
11	chr8:67407200-67411000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:67407200-67411000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:67407200-67411800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:67407200-67419400	Weak transcription	Aorta	Aorta
15	chr8:67407400-67410800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:67407400-67410800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:67407400-67416200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:67407600-67408200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr8:67407600-67408600	Weak transcription	Brain Substantia Nigra	brain
20	chr8:67407600-67410800	Weak transcription	HepG2	liver
21	chr8:67407600-67415400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr8:67407800-67408200	Flanking Active TSS	Brain Cingulate Gyrus	brain
23	chr8:67408000-67408200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
24	chr8:67408000-67408400	Flanking Active TSS	Brain Angular Gyrus	brain
25	chr8:67408000-67409400	Weak transcription	Brain Hippocampus Middle	brain

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