Variant report
| Variant | rs62511940 |
|---|---|
| Chromosome Location | chr8:67267092-67267093 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RRS1-3 | chr8:67266900-67267756 | ucscGeneNc_uc003xvz_1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs11994464 | 0.83[EUR][1000 genomes] |
| rs12541169 | 1.00[EUR][1000 genomes] |
| rs12546226 | 0.83[EUR][1000 genomes] |
| rs12547088 | 0.83[EUR][1000 genomes] |
| rs12674697 | 0.83[EUR][1000 genomes] |
| rs12674856 | 0.83[EUR][1000 genomes] |
| rs12676571 | 0.83[EUR][1000 genomes] |
| rs12680750 | 0.83[EUR][1000 genomes] |
| rs16932794 | 0.83[EUR][1000 genomes] |
| rs16932797 | 0.83[EUR][1000 genomes] |
| rs57145208 | 0.83[EUR][1000 genomes] |
| rs58426145 | 1.00[EUR][1000 genomes] |
| rs58730001 | 0.83[EUR][1000 genomes] |
| rs60505214 | 1.00[EUR][1000 genomes] |
| rs62511162 | 1.00[EUR][1000 genomes] |
| rs62511185 | 1.00[EUR][1000 genomes] |
| rs62511186 | 0.83[EUR][1000 genomes] |
| rs62511187 | 0.83[EUR][1000 genomes] |
| rs62511213 | 0.83[EUR][1000 genomes] |
| rs62511883 | 0.83[EUR][1000 genomes] |
| rs62511907 | 0.83[EUR][1000 genomes] |
| rs62512577 | 1.00[EUR][1000 genomes] |
| rs62512578 | 1.00[EUR][1000 genomes] |
| rs62512580 | 1.00[EUR][1000 genomes] |
| rs62512583 | 1.00[EUR][1000 genomes] |
| rs62512584 | 1.00[EUR][1000 genomes] |
| rs62512585 | 1.00[EUR][1000 genomes] |
| rs62512589 | 1.00[EUR][1000 genomes] |
| rs6986855 | 1.00[EUR][1000 genomes] |
| rs7002969 | 0.83[EUR][1000 genomes] |
| rs7010810 | 0.83[EUR][1000 genomes] |
| rs7010964 | 0.83[EUR][1000 genomes] |
| rs7016951 | 0.83[EUR][1000 genomes] |
| rs7819028 | 0.83[EUR][1000 genomes] |
| rs7834454 | 0.83[EUR][1000 genomes] |
| rs7839082 | 0.83[EUR][1000 genomes] |
| rs7840104 | 0.83[EUR][1000 genomes] |
| rs7840490 | 0.83[EUR][1000 genomes] |
| rs8180970 | 0.88[AFR][1000 genomes] |
| rs9643397 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3446467 | chr8:66749863-67667068 | Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
| 2 | esv3414665 | chr8:66936816-67381935 | Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:67265400-67268800 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
