Variant report

Variant	rs62512580
Chromosome Location	chr8:67411142-67411143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12541169	1.00[EUR][1000 genomes]
rs12546226	0.83[EUR][1000 genomes]
rs12547088	0.83[EUR][1000 genomes]
rs12674697	0.83[EUR][1000 genomes]
rs12674856	0.83[EUR][1000 genomes]
rs12676571	0.83[EUR][1000 genomes]
rs12680750	0.83[EUR][1000 genomes]
rs16932794	0.83[EUR][1000 genomes]
rs16932797	0.83[EUR][1000 genomes]
rs57145208	0.83[EUR][1000 genomes]
rs58426145	1.00[EUR][1000 genomes]
rs58730001	0.83[EUR][1000 genomes]
rs60505214	1.00[EUR][1000 genomes]
rs62511162	1.00[EUR][1000 genomes]
rs62511185	1.00[EUR][1000 genomes]
rs62511186	0.83[EUR][1000 genomes]
rs62511187	0.83[EUR][1000 genomes]
rs62511213	0.83[EUR][1000 genomes]
rs62511883	0.83[EUR][1000 genomes]
rs62511907	0.83[EUR][1000 genomes]
rs62511940	1.00[EUR][1000 genomes]
rs62512577	1.00[EUR][1000 genomes]
rs62512578	1.00[EUR][1000 genomes]
rs62512583	1.00[EUR][1000 genomes]
rs62512584	1.00[EUR][1000 genomes]
rs62512585	1.00[EUR][1000 genomes]
rs62512589	1.00[EUR][1000 genomes]
rs6986855	1.00[EUR][1000 genomes]
rs7002969	0.83[EUR][1000 genomes]
rs7005518	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7010810	0.83[EUR][1000 genomes]
rs7016951	0.83[EUR][1000 genomes]
rs7819028	0.83[EUR][1000 genomes]
rs7834454	0.83[EUR][1000 genomes]
rs7839082	0.83[EUR][1000 genomes]
rs7840104	0.83[EUR][1000 genomes]
rs7840490	0.83[EUR][1000 genomes]
rs9643397	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67406800-67419400	Weak transcription	Liver	Liver
2	chr8:67407000-67417400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:67407200-67411800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:67407200-67419400	Weak transcription	Aorta	Aorta
5	chr8:67407400-67416200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:67407600-67415400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:67408200-67415400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:67409800-67413600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr8:67410400-67411800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:67410400-67411800	Enhancers	Brain Substantia Nigra	brain
11	chr8:67410600-67411600	Enhancers	Brain Cingulate Gyrus	brain
12	chr8:67410800-67411200	Enhancers	Brain Angular Gyrus	brain
13	chr8:67410800-67411200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr8:67410800-67411200	Enhancers	A549	lung
15	chr8:67410800-67411200	Enhancers	HSMM	muscle
16	chr8:67410800-67411200	Enhancers	NH-A	brain
17	chr8:67410800-67411200	Enhancers	Osteobl	bone
18	chr8:67410800-67411400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:67410800-67411400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:67410800-67411400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr8:67410800-67411400	Enhancers	HepG2	liver
22	chr8:67410800-67411600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:67410800-67411800	Enhancers	Brain Hippocampus Middle	brain
24	chr8:67411000-67411200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr8:67411000-67411400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr8:67411000-67411400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:67411000-67411400	Enhancers	Brain Anterior Caudate	brain

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