Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10093212	0.80[AMR][1000 genomes]
rs10097974	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10098213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989852	0.90[JPT][hapmap]
rs11990678	0.90[JPT][hapmap]
rs11992351	0.82[AMR][1000 genomes]
rs11993981	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13272238	0.80[AMR][1000 genomes]
rs17194931	0.90[JPT][hapmap]
rs17279320	0.90[JPT][hapmap]
rs17279355	0.90[JPT][hapmap]
rs17279558	0.90[JPT][hapmap]
rs1869729	0.82[AMR][1000 genomes]
rs3780127	0.90[JPT][hapmap]
rs4237061	0.80[AMR][1000 genomes]
rs4237063	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237064	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4509316	0.80[AMR][1000 genomes]
rs4739021	0.82[AMR][1000 genomes]
rs7015302	0.86[JPT][hapmap]
rs7463670	0.80[AMR][1000 genomes]
rs7830289	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831341	chr8:63658694-63852213	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63832800-63833800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:63833000-63833200	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search: