Variant report

Variant	rs701473
Chromosome Location	chr5:60902270-60902271
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:60900962..60903313-chr5:60913201..60915983,2	K562	blood:
2	chr5:60901395..60903765-chr5:60906470..60908132,2	MCF-7	breast:
3	chr5:60894996..60897587-chr5:60899849..60902788,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs253185	0.90[ASN][1000 genomes]
rs383455	0.89[ASN][1000 genomes]
rs420518	0.88[ASN][1000 genomes]
rs442374	0.89[ASN][1000 genomes]
rs696161	0.99[ASN][1000 genomes]
rs696887	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs696888	0.99[ASN][1000 genomes]
rs701470	0.99[ASN][1000 genomes]
rs701471	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs701472	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs701474	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60895600-60912800	Weak transcription	Gastric	stomach
2	chr5:60896000-60902400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:60898800-60903000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:60898800-60910800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:60899600-60902600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr5:60900200-60903600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:60900600-60902400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr5:60900600-60905600	Weak transcription	Fetal Kidney	kidney
9	chr5:60900800-60905600	Weak transcription	A549	lung
10	chr5:60901000-60902400	Weak transcription	Fetal Muscle Leg	muscle
11	chr5:60901000-60902600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:60901200-60905400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:60901400-60905600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:60901400-60906200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr5:60901600-60904600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr5:60901600-60904800	Weak transcription	Brain Substantia Nigra	brain
17	chr5:60901600-60905000	Weak transcription	Brain Hippocampus Middle	brain
18	chr5:60901600-60905200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr5:60901600-60905600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:60901600-60905800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr5:60901800-60904800	Weak transcription	Brain Anterior Caudate	brain
22	chr5:60901800-60905600	Weak transcription	Brain Angular Gyrus	brain

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