Variant report

Variant	rs7015
Chromosome Location	chr7:97920623-97920624
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:97919740..97922168-chr7:98029497..98031239,2	K562	blood:
2	chr7:97918985..97921240-chr7:97938394..97941365,2	MCF-7	breast:
3	chr7:97909501..97912857-chr7:97918836..97922024,3	MCF-7	breast:
4	chr7:97910086..97912718-chr7:97919448..97921982,3	K562	blood:
5	chr7:97919740..97922396-chr7:98029231..98030997,2	K562	blood:

Variant related genes	Relation type
ENSG00000164713	Chromatin interaction
ENSG00000272782	Chromatin interaction
ENSG00000006453	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10953259	0.82[EUR][1000 genomes]
rs10953260	0.80[EUR][1000 genomes]
rs12704986	0.83[EUR][1000 genomes]
rs1688606	0.83[EUR][1000 genomes]
rs1688607	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3779195	0.85[EUR][1000 genomes]
rs3779196	0.83[EUR][1000 genomes]
rs6965424	0.83[EUR][1000 genomes]
rs6967728	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73141637	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3500384	chr7:97527787-98015382	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	esv3500386	chr7:97527787-98015382	Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1017481	chr7:97597641-98041043	Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv539031	chr7:97597641-98041043	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv1019531	chr7:97653880-98034129	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv539032	chr7:97653880-98034129	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv1033029	chr7:97773232-98017992	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv539033	chr7:97773232-98017992	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv888760	chr7:97816327-97965016	Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv831067	chr7:97860169-98065528	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
12	nsv1026477	chr7:97869446-98034129	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
13	esv1802449	chr7:97900191-97929668	Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97912800-97921200	Weak transcription	GM12878-XiMat	blood
2	chr7:97914000-97920800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:97914200-97925400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr7:97914200-97958400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:97914600-97923400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr7:97914800-97924600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:97915000-97920800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr7:97915200-97921800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr7:97916000-97923200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:97916000-97923400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:97916000-97927000	Weak transcription	Fetal Brain Male	brain
12	chr7:97916200-97923400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:97916200-97930400	Weak transcription	K562	blood
14	chr7:97916200-97933800	Strong transcription	Fetal Stomach	stomach
15	chr7:97916400-97921000	Weak transcription	Brain Angular Gyrus	brain
16	chr7:97916600-97920800	Weak transcription	NH-A	brain
17	chr7:97916600-97924400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:97916800-97920800	Weak transcription	Brain Substantia Nigra	brain
19	chr7:97916800-97923800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:97917000-97921000	Weak transcription	Brain Anterior Caudate	brain
21	chr7:97917000-97921000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr7:97917000-97923400	Strong transcription	Dnd41	blood
23	chr7:97917200-97925400	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:97917200-97926800	Strong transcription	Osteobl	bone
25	chr7:97917400-97920800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr7:97917400-97923400	Strong transcription	Aorta	Aorta
27	chr7:97917600-97921000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr7:97917600-97923000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:97917600-97923400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr7:97917600-97923400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr7:97917600-97924000	Strong transcription	Fetal Intestine Small	intestine
32	chr7:97917600-97924400	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr7:97917800-97920800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr7:97917800-97921000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr7:97917800-97921000	Weak transcription	Primary B cells from cord blood	blood
36	chr7:97917800-97921000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr7:97917800-97923600	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr7:97917800-97923800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr7:97917800-97923800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:97917800-97924400	Strong transcription	Fetal Intestine Large	intestine
41	chr7:97917800-97924600	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr7:97917800-97924800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr7:97917800-97925600	Weak transcription	Primary hematopoietic stem cells	blood
44	chr7:97917800-97926400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr7:97917800-97926800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:97918000-97923600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr7:97918000-97924200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr7:97918000-97927200	Strong transcription	NHLF	lung
49	chr7:97918200-97921000	Weak transcription	Fetal Thymus	thymus
50	chr7:97918200-97924200	Strong transcription	HMEC	breast

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