Variant report

Variant	rs7016162
Chromosome Location	chr8:99262231-99262232
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:99255307..99258219-chr8:99258829..99262487,4	MCF-7	breast:
2	chr8:99262046..99263647-chr8:99281338..99282967,2	MCF-7	breast:
3	chr8:99260188..99262511-chr8:99265064..99267419,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104361	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7833113	1.00[YRI][hapmap];0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv6326	chr8:99221674-99263687	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99226200-99267000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:99229400-99267000	Weak transcription	Left Ventricle	heart
3	chr8:99235400-99268400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr8:99239400-99268600	Weak transcription	Aorta	Aorta
5	chr8:99240400-99264400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:99240400-99266200	Weak transcription	Fetal Stomach	stomach
7	chr8:99240600-99267000	Weak transcription	Gastric	stomach
8	chr8:99240600-99294200	Weak transcription	Ovary	ovary
9	chr8:99241000-99269400	Weak transcription	Fetal Intestine Small	intestine
10	chr8:99249000-99267800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:99253000-99264000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:99253400-99273200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr8:99255400-99264400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr8:99255400-99266200	Weak transcription	HSMM	muscle
15	chr8:99255600-99272000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:99255600-99272000	Weak transcription	NHEK	skin
17	chr8:99255800-99266200	Weak transcription	Spleen	Spleen
18	chr8:99255800-99271800	Weak transcription	HMEC	breast
19	chr8:99257600-99266200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:99258000-99266000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr8:99258600-99268800	Weak transcription	NH-A	brain
22	chr8:99258600-99272000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr8:99258800-99262600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr8:99259200-99264800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr8:99259200-99272400	Weak transcription	Colonic Mucosa	Colon
26	chr8:99259600-99263000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:99259600-99264200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr8:99259800-99263000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:99259800-99264000	Weak transcription	Adipose Nuclei	Adipose
30	chr8:99259800-99264400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr8:99259800-99264400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr8:99259800-99266200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr8:99259800-99267000	Weak transcription	Lung	lung
34	chr8:99259800-99273000	Weak transcription	Pancreas	Pancrea
35	chr8:99260000-99262800	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr8:99260000-99263000	Weak transcription	Fetal Intestine Large	intestine
37	chr8:99260000-99264000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr8:99260000-99264200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr8:99260000-99264200	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr8:99260000-99264400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr8:99260000-99264400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr8:99260000-99264400	Weak transcription	Primary B cells from peripheral blood	blood
43	chr8:99260000-99264400	Weak transcription	Esophagus	oesophagus
44	chr8:99260200-99264200	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr8:99260400-99262600	Weak transcription	NHDF-Ad	bronchial
46	chr8:99260400-99304400	Weak transcription	Duodenum Mucosa	Duodenum
47	chr8:99260800-99262600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr8:99260800-99263000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr8:99261000-99264400	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr8:99261000-99273200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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