Variant report

Variant	rs7833113
Chromosome Location	chr8:99272318-99272319
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:99256959..99259667-chr8:99271247..99273915,3	MCF-7	breast:
2	chr8:99270377..99272371-chr8:99344599..99346284,2	MCF-7	breast:
3	chr8:99270866..99273832-chr8:99304414..99306479,5	MCF-7	breast:
4	chr8:99258977..99261249-chr8:99270985..99273813,2	MCF-7	breast:
5	chr8:99271141..99273979-chr8:99304755..99308094,7	MCF-7	breast:
6	chr8:99267147..99269398-chr8:99270200..99273584,3	MCF-7	breast:
7	chr8:99271786..99273294-chr8:99302806..99304675,2	MCF-7	breast:
8	chr8:99219935..99221824-chr8:99271736..99273785,2	MCF-7	breast:
9	chr8:99270989..99273601-chr8:99316752..99319337,2	MCF-7	breast:
10	chr8:99178658..99180420-chr8:99270653..99273641,2	MCF-7	breast:
11	chr8:99253235..99256078-chr8:99270762..99273176,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000104361	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55794997	1.00[AMR][1000 genomes]
rs57276342	1.00[AMR][1000 genomes]
rs7016162	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs73701156	1.00[AMR][1000 genomes]
rs73701158	1.00[AMR][1000 genomes]
rs73701160	1.00[AMR][1000 genomes]
rs73701164	1.00[AMR][1000 genomes]
rs73701177	1.00[AMR][1000 genomes]
rs73701183	1.00[AMR][1000 genomes]
rs73701189	1.00[AMR][1000 genomes]
rs7833427	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99240600-99294200	Weak transcription	Ovary	ovary
2	chr8:99253400-99273200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:99259200-99272400	Weak transcription	Colonic Mucosa	Colon
4	chr8:99259800-99273000	Weak transcription	Pancreas	Pancrea
5	chr8:99260400-99304400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:99261000-99273200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:99265400-99298400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr8:99265400-99304200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr8:99271600-99272400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
10	chr8:99271600-99272600	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr8:99271800-99272400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr8:99271800-99272400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:99271800-99272400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:99271800-99272600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr8:99271800-99272600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
16	chr8:99271800-99272600	Enhancers	HepG2	liver
17	chr8:99271800-99272800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
18	chr8:99272000-99272600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr8:99272200-99272400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:99272200-99272400	ZNF genes & repeats	Fetal Lung	lung
21	chr8:99272200-99272800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:99272200-99283600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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