Variant report

Variant	rs73701158
Chromosome Location	chr8:99322231-99322232
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55794997	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57276342	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73701156	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73701160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73701164	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73701177	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73701183	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73701189	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7833113	1.00[AMR][1000 genomes]
rs7833427	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831406	chr8:99290745-99482076	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99310200-99324200	Weak transcription	Fetal Heart	heart
2	chr8:99317600-99322800	Weak transcription	HMEC	breast
3	chr8:99318400-99323200	Weak transcription	Colonic Mucosa	Colon
4	chr8:99318800-99323200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:99318800-99323200	Weak transcription	NHEK	skin
6	chr8:99318800-99335200	Weak transcription	HSMM	muscle
7	chr8:99319000-99322400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:99319000-99322800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:99319000-99323200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:99319000-99323200	Weak transcription	Esophagus	oesophagus
11	chr8:99321600-99322600	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr8:99321600-99324600	Enhancers	Stomach Mucosa	stomach
13	chr8:99321600-99325200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr8:99321800-99322400	Enhancers	GM12878-XiMat	blood
15	chr8:99321800-99322800	Enhancers	K562	blood
16	chr8:99322000-99322400	Enhancers	Primary B cells from peripheral blood	blood
17	chr8:99322000-99322600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:99322200-99322400	Bivalent Enhancer	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links