Variant report

Variant	rs7020359
Chromosome Location	chr9:97044074-97044075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97021382..97023099-chr9:97043453..97045247,2	MCF-7	breast:
2	chr9:97040959..97043614-chr9:97043619..97047501,3	K562	blood:

Variant related genes	Relation type
ENSG00000175787	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1064560	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10821333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10821334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10821336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10993134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10993142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10993146	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12337094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12337563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12338855	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12341738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12347725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12350679	1.00[AFR][1000 genomes]
rs34172416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34750754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35148223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35177967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35230494	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36083433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55993768	1.00[AFR][1000 genomes]
rs66868150	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67171407	1.00[AFR][1000 genomes]
rs7029667	1.00[AFR][1000 genomes]
rs7034579	1.00[AFR][1000 genomes]
rs7849604	1.00[AFR][1000 genomes]
rs7867183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394266	chr9:96935210-97045514	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	195 gene(s)	inside rSNPs	diseases
2	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv968732	chr9:97043511-97050792	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97022200-97055200	Weak transcription	Aorta	Aorta
2	chr9:97022600-97055200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr9:97022800-97054600	Weak transcription	Pancreas	Pancrea
4	chr9:97023000-97050000	Weak transcription	Right Ventricle	heart
5	chr9:97023000-97055400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:97030200-97048400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:97031800-97050400	Weak transcription	Psoas Muscle	Psoas
8	chr9:97032400-97064600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:97033600-97054600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:97036800-97062600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:97037400-97050200	Weak transcription	Colon Smooth Muscle	Colon
12	chr9:97037600-97044600	Weak transcription	Fetal Stomach	stomach
13	chr9:97039200-97053600	Weak transcription	Brain Hippocampus Middle	brain
14	chr9:97039200-97055000	Weak transcription	Brain Substantia Nigra	brain
15	chr9:97039200-97062600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr9:97039400-97054600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:97039400-97067600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr9:97040000-97064600	Weak transcription	Brain Germinal Matrix	brain
19	chr9:97040400-97046000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr9:97040400-97046000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:97040400-97046000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
22	chr9:97040600-97044200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr9:97040600-97045400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
24	chr9:97040600-97046200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:97040600-97046600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
26	chr9:97041200-97048400	Weak transcription	NH-A	brain
27	chr9:97041200-97050000	Weak transcription	Gastric	stomach
28	chr9:97041200-97051600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:97041200-97054400	Weak transcription	NHDF-Ad	bronchial
30	chr9:97041200-97054600	Weak transcription	Stomach Mucosa	stomach
31	chr9:97041200-97065400	Weak transcription	Small Intestine	intestine
32	chr9:97041400-97050000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr9:97041400-97053600	Weak transcription	HepG2	liver
34	chr9:97041800-97054800	Weak transcription	Fetal Brain Male	brain
35	chr9:97042200-97054400	Weak transcription	Spleen	Spleen
36	chr9:97042200-97055400	Weak transcription	Esophagus	oesophagus
37	chr9:97042400-97050400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:97042400-97050600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr9:97042600-97044600	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr9:97042600-97061400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr9:97042600-97068400	Weak transcription	Fetal Brain Female	brain
42	chr9:97042800-97044200	Strong transcription	Primary B cells from peripheral blood	blood
43	chr9:97042800-97045000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr9:97042800-97049800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr9:97042800-97050200	Weak transcription	HSMMtube	muscle
46	chr9:97042800-97050600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr9:97042800-97054600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr9:97042800-97054600	Weak transcription	Fetal Kidney	kidney
49	chr9:97042800-97057000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr9:97042800-97064000	Weak transcription	H1 Cell Line	embryonic stem cell

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