Variant report

Variant	rs10821336
Chromosome Location	chr9:97050670-97050671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1064560	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10821333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10821334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10821343	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs10993134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10993141	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10993142	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10993146	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10993153	0.86[CEU][hapmap]
rs10993195	1.00[YRI][hapmap]
rs12335976	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs12337094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12337563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12338855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12341738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12343413	0.91[CEU][hapmap]
rs12347725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12350212	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs12350679	1.00[AFR][1000 genomes]
rs17351644	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs34172416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34750754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35148223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35177967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35230494	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36083433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4557766	1.00[CEU][hapmap]
rs55993768	1.00[AFR][1000 genomes]
rs66868150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67171407	1.00[AFR][1000 genomes]
rs7020359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7029667	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7034579	1.00[AFR][1000 genomes]
rs7849604	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7863750	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs7865288	1.00[CEU][hapmap]
rs7865561	1.00[CEU][hapmap]
rs7867183	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7867289	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs7874524	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv968732	chr9:97043511-97050792	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97022200-97055200	Weak transcription	Aorta	Aorta
2	chr9:97022600-97055200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr9:97022800-97054600	Weak transcription	Pancreas	Pancrea
4	chr9:97023000-97055400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr9:97032400-97064600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:97033600-97054600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:97036800-97062600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:97039200-97053600	Weak transcription	Brain Hippocampus Middle	brain
9	chr9:97039200-97055000	Weak transcription	Brain Substantia Nigra	brain
10	chr9:97039200-97062600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:97039400-97054600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr9:97039400-97067600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr9:97040000-97064600	Weak transcription	Brain Germinal Matrix	brain
14	chr9:97041200-97051600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:97041200-97054400	Weak transcription	NHDF-Ad	bronchial
16	chr9:97041200-97054600	Weak transcription	Stomach Mucosa	stomach
17	chr9:97041200-97065400	Weak transcription	Small Intestine	intestine
18	chr9:97041400-97053600	Weak transcription	HepG2	liver
19	chr9:97041800-97054800	Weak transcription	Fetal Brain Male	brain
20	chr9:97042200-97054400	Weak transcription	Spleen	Spleen
21	chr9:97042200-97055400	Weak transcription	Esophagus	oesophagus
22	chr9:97042600-97061400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr9:97042600-97068400	Weak transcription	Fetal Brain Female	brain
24	chr9:97042800-97054600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr9:97042800-97054600	Weak transcription	Fetal Kidney	kidney
26	chr9:97042800-97057000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr9:97042800-97064000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr9:97042800-97064400	Weak transcription	Hela-S3	cervix
29	chr9:97043000-97050800	Weak transcription	NHEK	skin
30	chr9:97043000-97051200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr9:97043000-97053600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr9:97043000-97053600	Weak transcription	Brain Anterior Caudate	brain
33	chr9:97043000-97054200	Weak transcription	Osteobl	bone
34	chr9:97043000-97057000	Weak transcription	HUVEC	blood vessel
35	chr9:97043000-97061400	Weak transcription	Fetal Thymus	thymus
36	chr9:97043200-97051600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:97043200-97051600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr9:97043200-97053600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr9:97043200-97054800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr9:97043200-97054800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr9:97043200-97054800	Weak transcription	Fetal Intestine Large	intestine
42	chr9:97043200-97055000	Weak transcription	Placenta	Placenta
43	chr9:97043200-97055200	Weak transcription	Fetal Intestine Small	intestine
44	chr9:97043200-97060000	Weak transcription	Fetal Lung	lung
45	chr9:97043200-97062800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr9:97043200-97062800	Weak transcription	Brain Angular Gyrus	brain
47	chr9:97043200-97063000	Weak transcription	HMEC	breast
48	chr9:97043200-97064000	Weak transcription	Colonic Mucosa	Colon
49	chr9:97043200-97064400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr9:97043600-97053600	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links