Variant report

Variant	rs12350212
Chromosome Location	chr9:97063628-97063629
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97062115..97063983-chr9:97064405..97066537,2	MCF-7	breast:
2	chr9:97038732..97040918-chr9:97062017..97064151,2	K562	blood:
3	chr9:97052305..97055569-chr9:97062185..97065091,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1064560	1.00[YRI][hapmap]
rs10821336	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs10821343	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10821344	1.00[AFR][1000 genomes]
rs10821349	1.00[AFR][1000 genomes]
rs10821350	1.00[AFR][1000 genomes]
rs10993141	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs10993142	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs10993146	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs10993153	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10993195	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10993200	1.00[AFR][1000 genomes]
rs10993202	1.00[AFR][1000 genomes]
rs10993208	1.00[AFR][1000 genomes]
rs10993209	1.00[AFR][1000 genomes]
rs12335794	1.00[AFR][1000 genomes]
rs12335976	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12343413	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12344077	1.00[AFR][1000 genomes]
rs12352497	1.00[AFR][1000 genomes]
rs17351644	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs34117319	1.00[AFR][1000 genomes]
rs4557766	0.91[CEU][hapmap]
rs7029667	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs7467208	1.00[AFR][1000 genomes]
rs7849604	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs7863750	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7865288	0.91[CEU][hapmap]
rs7865561	0.91[CEU][hapmap]
rs7867183	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs7867289	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7874524	1.00[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97032400-97064600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:97039400-97067600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr9:97040000-97064600	Weak transcription	Brain Germinal Matrix	brain
4	chr9:97041200-97065400	Weak transcription	Small Intestine	intestine
5	chr9:97042600-97068400	Weak transcription	Fetal Brain Female	brain
6	chr9:97042800-97064000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr9:97042800-97064400	Weak transcription	Hela-S3	cervix
8	chr9:97043200-97064000	Weak transcription	Colonic Mucosa	Colon
9	chr9:97043200-97064400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:97043800-97066400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:97050800-97064600	Weak transcription	Right Ventricle	heart
12	chr9:97052600-97064200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr9:97055200-97064200	Weak transcription	HSMM	muscle
14	chr9:97055400-97064200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:97055600-97063800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr9:97055600-97064200	Weak transcription	Fetal Intestine Large	intestine
17	chr9:97055600-97064400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:97055600-97066600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:97055600-97067800	Weak transcription	HepG2	liver
20	chr9:97055600-97068000	Weak transcription	Pancreas	Pancrea
21	chr9:97055800-97064400	Weak transcription	Lung	lung
22	chr9:97056000-97064600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:97056400-97064400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr9:97056400-97064600	Weak transcription	Brain Hippocampus Middle	brain
25	chr9:97056800-97064800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:97058400-97064600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:97058800-97065000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr9:97060600-97063800	Enhancers	Placenta	Placenta
29	chr9:97061600-97064200	Strong transcription	Adipose Nuclei	Adipose
30	chr9:97061600-97064600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:97061800-97064600	Strong transcription	Primary B cells from peripheral blood	blood
32	chr9:97062000-97064200	Strong transcription	Primary T cells from cord blood	blood
33	chr9:97062200-97063800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr9:97062200-97063800	Strong transcription	Skeletal Muscle Male	skeletal muscle
35	chr9:97062200-97064800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr9:97062800-97064400	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr9:97062800-97064400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr9:97062800-97066200	Weak transcription	Fetal Brain Male	brain
39	chr9:97063000-97064400	Flanking Active TSS	K562	blood
40	chr9:97063000-97064600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr9:97063000-97064600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr9:97063000-97064600	Weak transcription	Brain Anterior Caudate	brain
43	chr9:97063000-97064600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr9:97063000-97064600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr9:97063000-97064600	Weak transcription	Thymus	Thymus
46	chr9:97063000-97064600	Weak transcription	GM12878-XiMat	blood
47	chr9:97063000-97064600	Weak transcription	HSMMtube	muscle
48	chr9:97063000-97065200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr9:97063200-97064400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr9:97063200-97064600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links