Variant report

Variant	rs7874524
Chromosome Location	chr9:97084782-97084783
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10821336	0.92[CEU][hapmap]
rs10821343	1.00[CEU][hapmap]
rs10821344	0.83[AMR][1000 genomes]
rs10821349	0.83[AMR][1000 genomes]
rs10821350	0.83[AMR][1000 genomes]
rs10821351	0.83[AMR][1000 genomes]
rs10993141	0.91[CEU][hapmap]
rs10993142	0.91[CEU][hapmap]
rs10993146	0.91[CEU][hapmap]
rs10993153	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10993185	0.83[AMR][1000 genomes]
rs10993200	0.83[AMR][1000 genomes]
rs10993202	0.83[AMR][1000 genomes]
rs10993208	0.83[AMR][1000 genomes]
rs10993209	0.83[AMR][1000 genomes]
rs10993212	0.83[AMR][1000 genomes]
rs12335794	0.83[AMR][1000 genomes]
rs12335976	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12343413	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12344077	0.83[AMR][1000 genomes]
rs12350212	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs13292835	0.83[AMR][1000 genomes]
rs17351644	1.00[CEU][hapmap]
rs4557766	0.91[CEU][hapmap]
rs7029667	0.92[CEU][hapmap]
rs7048293	0.83[AMR][1000 genomes]
rs71263779	0.83[AMR][1000 genomes]
rs7467208	0.83[AMR][1000 genomes]
rs7849604	0.91[CEU][hapmap]
rs7863750	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs7865288	0.91[CEU][hapmap]
rs7865561	0.91[CEU][hapmap]
rs7867183	0.88[CEU][hapmap]
rs7867289	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs9886806	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	esv19421	chr9:97068893-97089175	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv968733	chr9:97077924-97099816	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
7	nsv482131	chr9:97080478-97090926	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7874524	HIATL1,HIATL2	cis	brain	BrainEAC

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97083200-97094600	Weak transcription	Right Atrium	heart
2	chr9:97084600-97085000	Enhancers	K562	blood
3	chr9:97084600-97086000	Active TSS	HepG2	liver

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