Variant report
Variant | rs10821351 |
---|---|
Chromosome Location | chr9:97256234-97256235 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr9:97242816..97244907-chr9:97253508..97257110,3 | MCF-7 | breast: |
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-HIATL1-9 | chr9:97254725-97256383 | NONHSAT133319 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10821343 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs10821344 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs10821349 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10821350 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs10993185 | 1.00[AMR][1000 genomes] |
rs10993195 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs10993200 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs10993202 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs10993208 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10993209 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10993212 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12335794 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12335976 | 0.93[AMR][1000 genomes] |
rs12344077 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs12349965 | 0.95[EUR][1000 genomes] |
rs12352497 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs13292835 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17351644 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs34117319 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs7026123 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs7048293 | 1.00[AMR][1000 genomes] |
rs71263779 | 1.00[AMR][1000 genomes] |
rs7467208 | 1.00[AMR][1000 genomes] |
rs7863750 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs7867289 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs7874524 | 0.83[AMR][1000 genomes] |
rs9886806 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv893592 | chr9:96973995-97295269 | Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
2 | esv2761545 | chr9:97025298-97356950 | Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
3 | nsv1041195 | chr9:97054795-97402378 | Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
4 | esv1840205 | chr9:97202200-97366400 | Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
5 | nsv893594 | chr9:97221463-97283226 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
6 | nsv614916 | chr9:97245822-97273659 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
7 | nsv969761 | chr9:97254596-97288069 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:97241800-97262800 | Weak transcription | Liver | Liver |