Variant report

Variant	rs12335976
Chromosome Location	chr9:97094088-97094089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:97093951-97094101	HUVEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
NUTM2F	TF binding region
ENSG00000232063	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1064560	1.00[YRI][hapmap]
rs10821336	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs10821343	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10821344	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10821349	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10821350	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10821351	0.93[AMR][1000 genomes]
rs10993141	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs10993142	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs10993146	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs10993153	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10993185	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10993195	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10993200	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10993202	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10993208	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10993209	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10993212	0.93[AMR][1000 genomes]
rs12335794	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12343413	1.00[CEU][hapmap]
rs12344077	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12350212	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12352497	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13292835	0.93[AMR][1000 genomes]
rs17351644	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs34117319	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4557766	0.91[CEU][hapmap]
rs7026123	0.81[AMR][1000 genomes]
rs7029667	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs7048293	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71263779	0.93[AMR][1000 genomes]
rs7467208	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7849604	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs7863750	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7865288	0.91[CEU][hapmap]
rs7865561	0.91[CEU][hapmap]
rs7867183	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs7867289	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7874524	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9886806	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv968733	chr9:97077924-97099816	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97083200-97094600	Weak transcription	Right Atrium	heart
2	chr9:97091000-97094600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr9:97093200-97100800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links